Thomas E. Koker

Papers from this author

On Identification and Retrieval of Near-Duplicate Biological Images: A New Dataset and Protocol

Thomas E. Koker, Sai Spandana Chintapalli, San Wang, Blake A. Talbot, Daniel Wainstock, Marcelo Cicconet, Mary C. Walsh
Track 4: Document and Media Analysis
Tue 12 Jan 2021 at 17:00 in session PS T4.1

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Auto-TLDR; BINDER: Bio-Image Near-Duplicate Examples Repository for Image Identification and Retrieval

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Manipulation and re-use of images in scientific publications is a growing issue, not only for biomedical publishers, but also for the research community in general. In this work we introduce BINDER -- Bio-Image Near-Duplicate Examples Repository, a novel dataset to help researchers develop, train, and test models to detect same-source biomedical images. BINDER contains 7,490 unique image patches for model training, 1,821 same-size patch duplicates for validation and testing, and 868 different-size image/patch pairs for image retrieval validation and testing. Except for the training set, patches already contain manipulations including rotation, translation, scale, perspective transform, contrast adjustment and/or compression artifacts. We further use the dataset to demonstrate how novel adaptations of existing image retrieval and metric learning models can be applied to achieve high-accuracy inference results, creating a baseline for future work. In aggregate, we thus present a supervised protocol for near-duplicate image identification and retrieval without any "real-world" training example. Our dataset and source code are available at hms-idac.github.io/BINDER.