Tracking Fast Moving Objects (FMO), which appear as blurred streaks in video sequences, is a difficult task for standard trackers, as the object position does not overlap in consecutive video frames and texture information of the objects is blurred. Up-to-date approaches tuned for this task are based on background subtraction with a static background and slow deblurring algorithms. In this article, we present a tracking-by-segmentation approach implemented using modern deep learning methods that perform near real-time tracking on real-world video sequences. We have developed a physically plausible FMO sequence generator to be a robust foundation for our training pipeline and demonstrate straightforward network adaptation for different FMO scenarios with varying foreground.