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Do Not Treat Boundaries and Regions Differently: An Example on Heart Left Atrial Segmentation

Zhou Zhao, Elodie Puybareau, Nicolas Boutry, Thierry Geraud

Auto-TLDR; Attention Full Convolutional Network for Atrial Segmentation using ResNet-101 Architecture

Abstract Slides

Atrial fibrillation is the most common heart rhythm disease. Due to a lack of understanding in matter of underlying atrial structures, current treatments are still not satisfying. Recently, with the popularity of deep learning, many segmentation methods based on fully convolutional networks have been proposed to analyze atrial structures, especially from late gadolinium-enhanced magnetic resonance imaging. However, two problems still occur: 1) segmentation results include the atrial-like background; 2) boundaries are very hard to segment. Most segmentation approaches design a specific network that mainly focuses on the regions, to the detriment of the boundaries. Therefore, this paper proposes an attention full convolutional network framework based on the ResNet-101 architecture, which focuses on boundaries as much as on regions. The additional attention module is added to have the network pay more attention on regions and then to reduce the impact of the misleading similarity of neighboring tissues. We also use a hybrid loss composed of a region loss and a boundary loss to treat boundaries and regions at the same time. We demonstrate the efficiency of the proposed approach on the MICCAI 2018 Atrial Segmentation Challenge public dataset.

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FOANet: A Focus of Attention Network with Application to Myocardium Segmentation

Zhou Zhao, Elodie Puybareau, Nicolas Boutry, Thierry Geraud

Auto-TLDR; FOANet: A Hybrid Loss Function for Myocardium Segmentation of Cardiac Magnetic Resonance Images

Abstract Slides Poster Similar

In myocardium segmentation of cardiac magnetic resonance images, ambiguities often appear near the boundaries of the target domains due to tissue similarities. To address this issue, we propose a new architecture, called FOANet, which can be decomposed in three main steps: a localization step, a Gaussian-based contrast enhancement step, and a segmentation step. This architecture is supplied with a hybrid loss function that guides the FOANet to study the transformation relationship between the input image and the corresponding label in a threelevel hierarchy (pixel-, patch- and map-level), which is helpful to improve segmentation and recovery of the boundaries. We demonstrate the efﬁciency of our approach on two public datasets in terms of regional and boundary segmentations.

Segmentation of Intracranial Aneurysm Remnant in MRA Using Dual-Attention Atrous Net

Subhashis Banerjee, Ashis Kumar Dhara, Johan Wikström, Robin Strand

Auto-TLDR; Dual-Attention Atrous Net for Segmentation of Intracranial Aneurysm Remnant from MRA Images

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Due to the advancement of non-invasive medical imaging modalities like Magnetic Resonance Angiography (MRA), an increasing number of Intracranial Aneurysm (IA) cases are being reported in recent years. The IAs are typically treated by so-called endovascular coiling, where blood flow in the IA is prevented by embolization with a platinum coil. Accurate quantification of the IA Remnant (IAR), i.e. the volume with blood flow present post treatment is the utmost important factor in choosing the right treatment planning. This is typically done by manually segmenting the aneurysm remnant from the MRA volume. Since manual segmentation of volumetric images is a labour-intensive and error-prone process, development of an automatic volumetric segmentation method is required. Segmentation of small structures such as IA, that may largely vary in size, shape, and location is considered extremely difficult. Similar intensity distribution of IAs and surrounding blood vessels makes it more challenging and susceptible to false positive. In this paper we propose a novel 3D CNN architecture called Dual-Attention Atrous Net (DAtt-ANet), which can efficiently segment IAR volumes from MRA images by reconciling features at different scales using the proposed Parallel Atrous Unit (PAU) along with the use of self-attention mechanism for extracting fine-grained features and intra-class correlation. The proposed DAtt-ANet model is trained and evaluated on a clinical MRA image dataset (prospective research project, approved by the local ethical committee) of IAR consisting of 46 subjects, annotated by an expert radiologist from our group. We compared the proposed DAtt-ANet with five state-of-the-art CNN models based on their segmentation performance. The proposed DAtt-ANet outperformed all other methods and was able to achieve a five-fold cross-validation DICE score of $0.73\pm0.06$.

DARN: Deep Attentive Refinement Network for Liver Tumor Segmentation from 3D CT Volume

Yao Zhang, Jiang Tian, Cheng Zhong, Yang Zhang, Zhongchao Shi, Zhiqiang He

Auto-TLDR; Deep Attentive Refinement Network for Liver Tumor Segmentation from 3D Computed Tomography Using Multi-Level Features

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Automatic liver tumor segmentation from 3D Computed Tomography (CT) is a necessary prerequisite in the interventions of hepatic abnormalities and surgery planning. However, accurate liver tumor segmentation remains challenging due to the large variability of tumor sizes and inhomogeneous texture. Recent advances based on Fully Convolutional Network (FCN) in liver tumor segmentation draw on success of learning discriminative multi-level features. In this paper, we propose a Deep Attentive Refinement Network (DARN) for improved liver tumor segmentation from CT volumes by fully exploiting both low and high level features embedded in different layers of FCN. Different from existing works, we exploit attention mechanism to leverage the relation of different levels of features encoded in different layers of FCN. Specifically, we introduce a Semantic Attention Refinement (SemRef) module to selectively emphasize global semantic information in low level features with the guidance of high level ones, and a Spatial Attention Refinement (SpaRef) module to adaptively enhance spatial details in high level features with the guidance of low level ones. We evaluate our network on the public MICCAI 2017 Liver Tumor Segmentation Challenge dataset (LiTS dataset) and it achieves state-of-the-art performance. The proposed refinement modules are an effective strategy to exploit multi-level features and has great potential to generalize to other medical image segmentation tasks.

BCAU-Net: A Novel Architecture with Binary Channel Attention Module for MRI Brain Segmentation

Yongpei Zhu, Zicong Zhou, Guojun Liao, Kehong Yuan

Auto-TLDR; BCAU-Net: Binary Channel Attention U-Net for MRI brain segmentation

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Recently deep learning-based networks have achieved advanced performance in medical image segmentation. However, the development of deep learning is slow in magnetic resonance image (MRI) segmentation of normal brain tissues. In this paper, inspired by channel attention module, we propose a new architecture, Binary Channel Attention U-Net (BCAU-Net), by introducing a novel Binary Channel Attention Module (BCAM) into skip connection of U-Net, which can take full advantages of the channel information extracted from the encoding path and corresponding decoding path. To better aggregate multi-scale spatial information of the feature map, spatial pyramid pooling (SPP) modules with different pooling operations are used in BCAM instead of original average-pooling and max-pooling operations. We verify this model on two datasets including IBSR and MRBrainS18, and obtain better performance on MRI brain segmentation compared with other methods. We believe the proposed method can advance the performance in brain segmentation and clinical diagnosis.

Global-Local Attention Network for Semantic Segmentation in Aerial Images

Minglong Li, Lianlei Shan, Weiqiang Wang

Auto-TLDR; GLANet: Global-Local Attention Network for Semantic Segmentation

Abstract Slides Poster Similar

Errors in semantic segmentation task could be classified into two types: large area misclassification and local inaccurate boundaries. Previously attention based methods capture rich global contextual information, this is beneficial to diminish the first type of error, but local imprecision still exists. In this paper we propose Global-Local Attention Network (GLANet) with a simultaneous consideration of global context and local details. Specifically, our GLANet is composed of two branches namely global attention branch and local attention branch, and three different modules are embedded in the two branches for the purpose of modeling semantic interdependencies in spatial, channel and boundary dimensions respectively. We sum the outputs of the two branches to further improve feature representation, leading to more precise segmentation results. The proposed method achieves very competitive segmentation accuracy on two public aerial image datasets, bringing significant improvements over baseline.

3D Medical Multi-Modal Segmentation Network Guided by Multi-Source Correlation Constraint

Tongxue Zhou, Stéphane Canu, Pierre Vera, Su Ruan

Auto-TLDR; Multi-modality Segmentation with Correlation Constrained Network

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In the field of multimodal segmentation, the correlation between different modalities can be considered for improving the segmentation results. In this paper, we propose a multi-modality segmentation network with a correlation constraint. Our network includes N model-independent encoding paths with N image sources, a correlation constrain block, a feature fusion block, and a decoding path. The model-independent encoding path can capture modality-specific features from the N modalities. Since there exists a strong correlation between different modalities, we first propose a linear correlation block to learn the correlation between modalities, then a loss function is used to guide the network to learn the correlated features based on the correlation representation block. This block forces the network to learn the latent correlated features which are more relevant for segmentation. Considering that not all the features extracted from the encoders are useful for segmentation, we propose to use dual attention based fusion block to recalibrate the features along the modality and spatial paths, which can suppress less informative features and emphasize the useful ones. The fused feature representation is finally projected by the decoder to obtain the segmentation result. Our experiment results tested on BraTS-2018 dataset for brain tumor segmentation demonstrate the effectiveness of our proposed method.

Boundary-Aware Graph Convolution for Semantic Segmentation

Hanzhe Hu, Jinshi Cui, Jinshi Hongbin Zha

Auto-TLDR; Boundary-Aware Graph Convolution for Semantic Segmentation

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Recent works have made great progress in semantic segmentation by exploiting contextual information in a local or global manner with dilated convolutions, pyramid pooling or self-attention mechanism. However, few works have focused on harvesting boundary information to improve the segmentation performance. In order to enhance the feature similarity within the object and keep discrimination from other objects, we propose a boundary-aware graph convolution (BGC) module to propagate features within the object. The graph reasoning is performed among pixels of the same object apart from the boundary pixels. Based on the proposed BGC module, we further introduce the Boundary-aware Graph Convolution Network(BGCNet), which consists of two main components including a basic segmentation network and the BGC module, forming a coarse-to-fine paradigm. Specifically, the BGC module takes the coarse segmentation feature map as node features and boundary prediction to guide graph construction. After graph convolution, the reasoned feature and the input feature are fused together to get the refined feature, producing the refined segmentation result. We conduct extensive experiments on three popular semantic segmentation benchmarks including Cityscapes, PASCAL VOC 2012 and COCO Stuff, and achieve state-of-the-art performance on all three benchmarks.

Automatic Semantic Segmentation of Structural Elements related to the Spinal Cord in the Lumbar Region by Using Convolutional Neural Networks

Jhon Jairo Sáenz Gamboa, Maria De La Iglesia-Vaya, Jon Ander Gómez

Auto-TLDR; Semantic Segmentation of Lumbar Spine Using Convolutional Neural Networks

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This work addresses the problem of automatically segmenting the MR images corresponding to the lumbar spine. The purpose is to detect and delimit the different structural elements like vertebrae, intervertebral discs, nerves, blood vessels, etc. This task is known as semantic segmentation. The approach proposed in this work is based on convolutional neural networks whose output is a mask where each pixel from the input image is classified into one of the possible classes. Classes were defined by radiologists and correspond to structural elements and tissues. The proposed network architectures are variants of the U-Net. Several complementary blocks were used to define the variants: spatial attention models, deep supervision and multi-kernels at input, this last block type is based on the idea of inception. Those architectures which got the best results are described in this paper, and their results are discussed. Two of the proposed architectures outperform the standard U-Net used as baseline.

A Benchmark Dataset for Segmenting Liver, Vasculature and Lesions from Large-Scale Computed Tomography Data

Bo Wang, Zhengqing Xu, Wei Xu, Qingsen Yan, Liang Zhang, Zheng You

Auto-TLDR; The Biggest Treatment-Oriented Liver Cancer Dataset for Segmentation

Abstract Slides Poster Similar

How to build a high-performance liver-related computer assisted diagnosis system is an open question of great interest. However, the performance of the state-of-art algorithm is always limited by the amount of data and quality of the label. To address this problem, we propose the biggest treatment-oriented liver cancer dataset for liver surgery and treatment planning. This dataset provides 216 cases (totally about 268K frames) scanned images in contrast-enhanced computed tomography (CT). We labeled all the CT images with the liver, liver vasculature and liver tumor segmentation ground truth for train and tune segmentation algorithms in advance. Based on that, we evaluate several recent and state-of-the-art segmentation algorithms, including 7 deep learning methods, on CT sequences. All results are compared to reference segmentations five error metrics that highlight different aspects of segmentation accuracy. In general, compared with previous datasets, our dataset is really a challenging dataset. To our knowledge, the proposed dataset and benchmark allow for the first time systematic exploration of such issues, and will be made available to allow for further research in this field.

DE-Net: Dilated Encoder Network for Automated Tongue Segmentation

Hui Tang, Bin Wang, Jun Zhou, Yongsheng Gao

Auto-TLDR; Automated Tongue Image Segmentation using De-Net

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Automated tongue recognition is a growing research field due to global demand for personal health care. Using mobile devices to take tongue pictures is convenient and of low cost for tongue recognition. It is particularly suitable for self-health evaluation of the public. However, images taken by mobile devices are easily affected by various imaging environment, which makes fine segmentation a more challenging task compared with those taken by specialized acquisition devices. Deep learning approaches are promising for tongue image segmentation because they have powerful feature learning and representation capability. However, the successive pooling operations in these methods lead to loss of information on image details, making them fail when segmenting low-quality images captured by mobile devices. To address this issue, we propose a dilated encoder network (DE-Net) to capture more high-level features and get high-resolution output for automated tongue image segmentation. In addition, we construct two tongue image datasets which contain images taken by specialized devices and mobile devices, respectively, to verify the effectiveness of the proposed method. Experimental results on both datasets demonstrate that the proposed method outperforms the state-of-the-art methods in tongue image segmentation.

BG-Net: Boundary-Guided Network for Lung Segmentation on Clinical CT Images

Rui Xu, Yi Wang, Tiantian Liu, Xinchen Ye, Lin Lin, Yen-Wei Chen, Shoji Kido, Noriyuki Tomiyama

Auto-TLDR; Boundary-Guided Network for Lung Segmentation on CT Images

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Lung segmentation on CT images is a crucial step for a computer-aided diagnosis system of lung diseases. The existing deep learning based lung segmentation methods are less efficient to segment lungs on clinical CT images, especially that the segmentation on lung boundaries is not accurate enough due to complex pulmonary opacities in practical clinics. In this paper, we propose a boundary-guided network (BG-Net) to address this problem. It contains two auxiliary branches that separately segment lungs and extract the lung boundaries, and an aggregation branch that efficiently exploits lung boundary cues to guide the network for more accurate lung segmentation on clinical CT images. We evaluate the proposed method on a private dataset collected from the Osaka university hospital and four public datasets including StructSeg, HUG, VESSEL12, and a Novel Coronavirus 2019 (COVID-19) dataset. Experimental results show that the proposed method can segment lungs more accurately and outperform several other deep learning based methods.

A Multi-Task Contextual Atrous Residual Network for Brain Tumor Detection & Segmentation

Ngan Le, Kashu Yamazaki, Quach Kha Gia, Thanh-Dat Truong, Marios Savvides

Auto-TLDR; Contextual Brain Tumor Segmentation Using 3D atrous Residual Networks and Cascaded Structures

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In recent years, deep neural networks have achieved state-of-the-art performance in a variety of recognition and segmentation tasks in medical imaging including brain tumor segmentation. We investigate that segmenting brain tumor is facing to the imbalanced data problem where the number of pixels belonging to background class (non tumor pixel) is much larger than the number of pixels belonging to foreground class (tumor pixel). To address this problem, we propose a multi-task network which is formed as a cascaded structure and designed to share the feature maps. Our model consists of two targets, i.e., (i) effectively differentiating brain tumor regions and (ii) estimating brain tumor masks. The first task is performed by our proposed contextual brain tumor detection network, which plays the role of an attention gate and focuses on the region around brain tumor only while ignore the background (non tumor area). Instead of processing every pixel, our contextual brain tumor detection network only processes contextual regions around ground-truth instances and this strategy helps to produce meaningful regions proposals. The second task is built upon a 3D atrous residual network and under an encode-decode network in order to effectively segment both large and small objects (brain tumor). Our 3D atrous residual network is designed with a skip connection to enables the gradient from the deep layers to be directly propagated to shallow layers, thus, features of different depths are preserved and used for refining each other. In order to incorporate larger contextual information in volume MRI data, our network is designed by 3D atrous convolution with various kernel sizes, which enlarges the receptive field of filters. Our proposed network has been evaluated on various datasets including BRATS2015, BRATS2017 and BRATS2018 datasets with both validation set and testing set. Our performance has been benchmarked by both region-based metrics and surface-based metrics. We also have conducted comparisons against state-of-the-art approaches.

Triplet-Path Dilated Network for Detection and Segmentation of General Pathological Images

Jiaqi Luo, Zhicheng Zhao, Fei Su, Limei Guo

Auto-TLDR; Triplet-path Network for One-Stage Object Detection and Segmentation in Pathological Images

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Deep learning has been widely applied in the field of medical image processing. However, compared with flourishing visual tasks in natural images, the progress achieved in pathological images is not remarkable, and detection and segmentation, which are among basic tasks of computer vision, are regarded as two independent tasks. In this paper, we make full use of existing datasets and construct a triplet-path network using dilated convolutions to cooperatively accomplish one-stage object detection and nuclei segmentation for general pathological images. First, in order to meet the requirement of detection and segmentation, a novel structure called triplet feature generation (TFG) is designed to extract high-resolution and multiscale features, where features from different layers can be properly integrated. Second, considering that pathological datasets are usually small, a location-aware and partially truncated loss function is proposed to improve the classification accuracy of datasets with few images and widely varying targets. We compare the performance of both object detection and instance segmentation with state-of-the-art methods. Experimental results demonstrate the effectiveness and efficiency of the proposed network on two datasets collected from multiple organs.

Deep Recurrent-Convolutional Model for AutomatedSegmentation of Craniomaxillofacial CT Scans

Francesca Murabito, Simone Palazzo, Federica Salanitri Proietto, Francesco Rundo, Ulas Bagci, Daniela Giordano, Rosalia Leonardi, Concetto Spampinato

Auto-TLDR; Automated Segmentation of Anatomical Structures in Craniomaxillofacial CT Scans using Fully Convolutional Deep Networks

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In this paper we define a deep learning architecture for automated segmentation of anatomical structures in Craniomaxillofacial (CMF) CT scans that leverages the recent success of encoder-decoder models for semantic segmentation of natural images. In particular, we propose a fully convolutional deep network that combines the advantages of recent fully convolutional models, such as Tiramisu, with squeeze-and-excitation blocks for feature recalibration, integrated with convolutional LSTMs to model spatio-temporal correlations between consecutive slices. The proposed segmentation network shows superior performance and generalization capabilities (to different structures and imaging modalities) than state of the art methods on automated segmentation of CMF structures (e.g., mandibles and airways) in several standard benchmarks (e.g., MICCAI datasets) and on new datasets proposed herein, effectively facing shape variability.

Progressive Scene Segmentation Based on Self-Attention Mechanism

Yunyi Pan, Yuan Gan, Kun Liu, Yan Zhang

Auto-TLDR; Two-Stage Semantic Scene Segmentation with Self-Attention

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Semantic scene segmentation is vital for a large variety of applications as it enables understanding of 3D data. Nowadays, various approaches based upon point clouds ignore the mathematical distribution of points and treat the points equally. The methods following this direction neglect the imbalance problem of samples that naturally exists in scenes. To avoid these issues, we propose a two-stage semantic scene segmentation framework based on self-attention mechanism and achieved state-of-the-art performance on 3D scene understanding tasks. We split the whole task into two small ones which efficiently relief the sample imbalance issue. In addition, we have designed a new self-attention block which could be inserted into submanifold convolution networks to model the long-range dependencies that exists among points. The proposed network consists of an encoder and a decoder, with the spatial-wise and channel-wise attention modules inserted. The two-stage network shares a U-Net architecture and is an end-to-end trainable framework which could predict the semantic label for the scene point clouds fed into it. Experiments on standard benchmarks of 3D scenes implies that our network could perform at par or better than the existing state-of-the-art methods.

A Deep Learning Approach for the Segmentation of Myocardial Diseases

Khawala Brahim, Abdull Qayyum, Alain Lalande, Arnaud Boucher, Anis Sakly, Fabrice Meriaudeau

Auto-TLDR; Segmentation of Myocardium Infarction Using Late GADEMRI and SegU-Net

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Cardiac left ventricular (LV) segmentation is of paramount essential step for both diagnosis and treatment of cardiac pathologies such as ischemia, myocardial infarction, arrhythmia and myocarditis. However, this segmentation is challenging due to high variability across patients and the potential lack of contrast between structures. In this work, we propose and evaluate a (2.5D) SegU-Net model based on the fusion of two deep learning techniques (U-Net and Seg-Net) for automated LGEMRI (Late gadolinium enhanced magnetic resonance imaging) myocardial disease (infarct core and no reflow region) quantification in a new multifield expert annotated dataset. Given that the scar tissue represents a small part of the whole MRI slices, we focused on myocardium area. Segmentation results show that this preprocessing step facilitate the learning procedure. In order to solve the class imbalance problem, we propose to apply the Jaccard loss and the Focal Loss as optimization loss function and to integrate a class weights strategy into the objective function. Late combination has been used to merge the output of the best trained models on a different set of hyperparameters. The final network segmentation performances will be useful for future comparison of new method to the current related work for this task. A total number of 2237 of slices (320 cases) were used for training/validation and 210 slices (35 cases) were used for testing. Experiments over our proposed dataset, using several evaluation metrics such Jaccard distance (IOU), Accuracy and Dice similarity coefficient (DSC), demonstrate efficiency performance in quantifying different zones of myocardium infarction across various patients. As compared to the second intra-observer study, our testing results showed that the SegUNet prediction model leads to these average dice coefficients over all segmented tissue classes, respectively : 'Background': 0.99999, 'Myocardium': 0.99434, 'Infarctus': 0.95587, 'Noreflow': 0.78187.

Transitional Asymmetric Non-Local Neural Networks for Real-World Dirt Road Segmentation

Yooseung Wang, Jihun Park

Auto-TLDR; Transitional Asymmetric Non-Local Neural Networks for Semantic Segmentation on Dirt Roads

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Understanding images by predicting pixel-level semantic classes is a fundamental task in computer vision and is one of the most important techniques for autonomous driving. Recent approaches based on deep convolutional neural networks have dramatically improved the speed and accuracy of semantic segmentation on paved road datasets, however, dirt roads have yet to be systematically studied. Dirt roads do not contain clear boundaries between drivable and non-drivable regions; and thus, this difficulty must be overcome for the realization of fully autonomous vehicles. The key idea of our approach is to apply lightweight non-local blocks to reinforce stage-wise long-range dependencies in encoder-decoder style backbone networks. Experiments on 4,687 images of a dirt road dataset show that our transitional asymmetric non-local neural networks present a higher accuracy with lower computational costs compared to state-of-the-art models.

DA-RefineNet: Dual-Inputs Attention RefineNet for Whole Slide Image Segmentation

Ziqiang Li, Rentuo Tao, Qianrun Wu, Bin Li

Auto-TLDR; DA-RefineNet: A dual-inputs attention network for whole slide image segmentation

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Automatic medical image segmentation techniques have wide applications for disease diagnosing, however, its much more challenging than natural optical image segmentation tasks due to the high-resolution of medical images and the corresponding huge computation cost. Sliding window was a commonly used technique for whole slide image (WSI) segmentation, however, for these methods that based on sliding window, the main drawback was lacking of global contextual information for supervision. In this paper, we proposed a dual-inputs attention network (denoted as DA-RefineNet) for WSI segmentation, where both local fine-grained information and global coarse information can be efficiently utilized. Sufficient comparative experiments were conducted to evaluate the effectiveness of the proposed method, the results proved that the proposed method can achieve better performance on WSI segmentation tasks compared to methods rely on single-input.

CAggNet: Crossing Aggregation Network for Medical Image Segmentation

Xu Cao, Yanghao Lin

Auto-TLDR; Crossing Aggregation Network for Medical Image Segmentation

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In this paper, we present Crossing Aggregation Network (CAggNet), a novel densely connected semantic segmentation method for medical image analysis. The crossing aggregation network absorbs the idea of deep layer aggregation and makes significant innovations in layer connection and semantic information fusion. In this architecture, the traditional skip-connection structure of general U-Net is replaced by aggregations of multi-level down-sampling and up-sampling layers. This enables the network to fuse information interactively flows at different levels of layers in semantic segmentation. It also introduces weighted aggregation module to aggregate multi-scale output information. We have evaluated and compared our CAggNet with several advanced U-Net based methods in two public medical image datasets, including the 2018 Data Science Bowl nuclei detection dataset and the 2015 MICCAI gland segmentation competition dataset. Experimental results indicate that CAggNet improves medical object recognition and achieves a more accurate and efficient segmentation compared to existing improved U-Net and UNet++ structure.

Planar 3D Transfer Learning for End to End Unimodal MRI Unbalanced Data Segmentation

Martin Kolarik, Radim Burget, Carlos M. Travieso-Gonzalez, Jan Kocica

Auto-TLDR; Planar 3D Res-U-Net Network for Unbalanced 3D Image Segmentation using Fluid Attenuation Inversion Recover

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We present a novel approach of 2D to 3D transfer learning based on mapping pre-trained 2D convolutional neural network weights into planar 3D kernels. The method is validated by proposed planar 3D res-u-net network with encoder transferred from the 2D VGG-16 which is applied for a single-stage unbalanced 3D image data segmentation. In particular, we evaluate the method on the MICCAI 2016 MS lesion segmentation challenge dataset utilizing solely Fluid Attenuation Inversion Recover (FLAIR) sequence without brain extraction for training and inference to simulate real medical praxis. The planar 3D res-u-net network performed the best both in sensitivity and Dice score amongst end to end methods processing raw MRI scans and achieved comparable Dice score to a state-of-the-art unimodal not end to end approach. Complete source code was released under the open-source license and this paper is in compliance with the Machine learning Reproducibility Checklist. By implementing practical transfer learning for 3D data representation we were able to successfully segment heavily unbalanced data without selective sampling and achieved more reliable results using less training data in single modality. From medical perspective, the unimodal approach gives an advantage in real praxis as it does not require co-registration nor additional scanning time during examination. Although modern medical imaging methods capture high resolution 3D anatomy scans suitable for computer aided detection system processing, deployment of automatic systems for interpretation of radiology imaging is still rather theoretical in many medical areas. Our work aims to bridge the gap offering solution for partial research questions.

PSDNet: A Balanced Architecture of Accuracy and Parameters for Semantic Segmentation

Yue Liu, Zhichao Lian

Auto-TLDR; Pyramid Pooling Module with SE1Cblock and D2SUpsample Network (PSDNet)

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Abstract—In this paper, we present our Pyramid Pooling Module （PPM） with SE1Cblock and D2SUpsample Network (PSDNet), a novel architecture for accurate semantic segmentation. Started from the known work called Pyramid Scene Parsing Network (PSPNet), PSDNet takes advantage of pyramid pooling structure with channel attention module and feature transform module in Pyramid Pooling Module (PPM). The enhanced PPM with these two components can strengthen context information flowing in the network instead of damaging it. The channel attention module we mentioned is an improved “Squeeze and Excitation with 1D Convolution” (SE1C) block which can explicitly model interrelationship between channels with fewer number of parameters. We propose a feature transform module named “Depth to Space Upsampling” (D2SUpsample) in the PPM which keeps integrity of features by transforming features while interpolating features, at the same time reducing parameters. In addition, we introduce a joint strategy in SE1Cblock which combines two variants of global pooling without increasing parameters. Compared with PSPNet, our work achieves higher accuracy on public datasets with 73.97% mIoU and 82.89% mAcc accuracy on Cityscapes Dataset based on ResNet50 backbone.

Enhanced Feature Pyramid Network for Semantic Segmentation

Mucong Ye, Ouyang Jinpeng, Ge Chen, Jing Zhang, Xiaogang Yu

Auto-TLDR; EFPN: Enhanced Feature Pyramid Network for Semantic Segmentation

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Multi-scale feature fusion has been an effective way for improving the performance of semantic segmentation. However, current methods generally fail to consider the semantic gaps between the shallow (low-level) and deep (high-level) features and thus the fusion methods may not be optimal. In this paper, to address the issues of the semantic gap between the feature from different layers, we propose a unified framework based on the U-shape encoder-decoder architecture, named Enhanced Feature Pyramid Network (EFPN). Specifically, the semantic enhancement module (SEM), boundary extraction module (BEM), and context aggregation model (CAM) are incorporated into the decoder network to improve the robustness of the multi-level features aggregation. In addition, a global fusion model (GFM) in encoder branch is proposed to capture more semantic information in the deep layers and effectively transmit the high-level semantic features to each layer. Extensive experiments are conducted and the results show that the proposed framework achieves the state-of-the-art results on three public datasets, namely PASCAL VOC 2012, Cityscapes, and PASCAL Context. Furthermore, we also demonstrate that the proposed method is effective for other visual tasks that require frequent fusing features and upsampling.

Dynamic Guided Network for Monocular Depth Estimation

Xiaoxia Xing, Yinghao Cai, Yiping Yang, Dayong Wen

Auto-TLDR; DGNet: Dynamic Guidance Upsampling for Self-attention-Decoding for Monocular Depth Estimation

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Self-attention or encoder-decoder structure has been widely used in deep neural networks for monocular depth estimation tasks. The former mechanism are capable to capture long-range information by computing the representation of each position by a weighted sum of the features at all positions, while the latter networks can capture structural details information by gradually recovering the spatial information. In this work, we combine the advantages of both methods. Specifically, our proposed model, DGNet, extends EMANet Network by adding an effective decoder module to refine the depth results. In the decoder stage, we further design dynamic guidance upsampling which uses local neighboring information of low-level features guide coarser depth to upsample. In this way, dynamic guidance upsampling generates content-dependent and spatially-variant kernels for depth upsampling which makes full use of spatial details information from low-level features. Experimental results demonstrate that our method obtains higher accuracy and generates the desired depth map.

MTGAN: Mask and Texture-Driven Generative Adversarial Network for Lung Nodule Segmentation

Wei Chen, Qiuli Wang, Kun Wang, Dan Yang, Xiaohong Zhang, Chen Liu, Yucong Li

Auto-TLDR; Mask and Texture-driven Generative Adversarial Network for Lung Nodule Segmentation

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Accurate segmentation for lung nodules in lung computed tomography (CT) scans plays a key role in the early diagnosis of lung cancer. Many existing methods, especially UNet, have made significant progress in lung nodule segmentation. However, due to the complex shapes of lung nodules and the similarity of visual characteristics between nodules and lung tissues, an accurate segmentation with few false positives of lung nodules is still a challenging problem. Considering the fact that both boundary and texture information of lung nodules are important for obtaining an accurate segmentation result, we propose a novel Mask and Texture-driven Generative Adversarial Network (MTGAN) with a joint multi-scale L1 loss for lung nodule segmentation, which takes full advantages of U-Net and adversarial training. The proposed MTGAN leverages adversarial learning strategy guided by the boundary and texture information of lung nodules to generate more accurate segmentation results with lesser false positives. We validate our model with the LIDC–IDRI dataset, and experimental results show that our method achieves excellent segmentation results for a variety of lung nodules, especially for juxtapleural nodules and low-dense nodules. Without any bells and whistles, the proposed MTGAN achieves significant segmentation performance with the Dice similarity coefficient (DSC) of 85.24% on the LIDC–IDRI dataset.

Accurate Cell Segmentation in Digital Pathology Images Via Attention Enforced Networks

Zeyi Yao, Kaiqi Li, Guanhong Zhang, Yiwen Luo, Xiaoguang Zhou, Muyi Sun

Auto-TLDR; AENet: Attention Enforced Network for Automatic Cell Segmentation

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Automatic cell segmentation is an essential step in the pipeline of computer-aided diagnosis (CAD), such as the detection and grading of breast cancer. Accurate segmentation of cells can not only assist the pathologists to make a more precise diagnosis, but also save much time and labor. However, this task suffers from stain variation, cell inhomogeneous intensities, background clutters and cells from different tissues. To address these issues, we propose an Attention Enforced Network (AENet), which is built on spatial attention module and channel attention module, to integrate local features with global dependencies and weight effective channels adaptively. Besides, we introduce a feature fusion branch to bridge high-level and low-level features. Finally, the marker controlled watershed algorithm is applied to post-process the predicted segmentation maps for reducing the fragmented regions. In the test stage, we present an individual color normalization method to deal with the stain variation problem. We evaluate this model on the MoNuSeg dataset. The quantitative comparisons against several prior methods demonstrate the priority of our approach.

Learn to Segment Retinal Lesions and Beyond

Qijie Wei, Xirong Li, Weihong Yu, Xiao Zhang, Yongpeng Zhang, Bojie Hu, Bin Mo, Di Gong, Ning Chen, Dayong Ding, Youxin Chen

Auto-TLDR; Multi-task Lesion Segmentation and Disease Classification for Diabetic Retinopathy Grading

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Towards automated retinal screening, this paper makes an endeavor to simultaneously achieve pixel-level retinal lesion segmentation and image-level disease classification. Such a multi-task approach is crucial for accurate and clinically interpretable disease diagnosis. Prior art is insufficient due to three challenges, i.e., lesions lacking objective boundaries, clinical importance of lesions irrelevant to their size, and the lack of one-to-one correspondence between lesion and disease classes. This paper attacks the three challenges in the context of diabetic retinopathy (DR) grading. We propose Lesion-Net, a new variant of fully convolutional networks, with its expansive path re- designed to tackle the first challenge. A dual Dice loss that leverages both semantic segmentation and image classification losses is introduced to resolve the second challenge. Lastly, we build a multi-task network that employs Lesion-Net as a side- attention branch for both DR grading and result interpretation. A set of 12K fundus images is manually segmented by 45 ophthalmologists for 8 DR-related lesions, resulting in 290K manual segments in total. Extensive experiments on this large- scale dataset show that our proposed approach surpasses the prior art for multiple tasks including lesion segmentation, lesion classification and DR grading.

CSpA-DN: Channel and Spatial Attention Dense Network for Fusing PET and MRI Images

Bicao Li, Zhoufeng Liu, Shan Gao, Jenq-Neng Hwang, Jun Sun, Zongmin Wang

Auto-TLDR; CSpA-DN: Unsupervised Fusion of PET and MR Images with Channel and Spatial Attention

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In this paper, we propose a novel unsupervised fusion framework based on a dense network with channel and spatial attention (CSpA-DN) for PET and MR images. In our approach, an encoder composed of the densely connected neural network is constructed to extract features from source images, and a decoder network is leveraged to yield the fused image from these features. Simultaneously, a self-attention mechanism is introduced in the encoder and decoder to further integrate local features along with their global dependencies adaptively. The extracted feature of each spatial position is synthesized by a weighted summation of those features at the same row and column with this position via a spatial attention module. Meanwhile, the interdependent relationship of all feature maps is integrated by a channel attention module. The summation of the outputs of these two attention modules is fed into the decoder and the fused image is generated. Experimental results illustrate the superiorities of our proposed CSpA-DN model compared with state-of-the-art methods in PET and MR images fusion according to both visual perception and objective assessment.

Encoder-Decoder Based Convolutional Neural Networks with Multi-Scale-Aware Modules for Crowd Counting

Pongpisit Thanasutives, Ken-Ichi Fukui, Masayuki Numao, Boonserm Kijsirikul

Auto-TLDR; M-SFANet and M-SegNet for Crowd Counting Using Multi-Scale Fusion Networks

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In this paper, we proposed two modified neural networks based on dual path multi-scale fusion networks (SFANet) and SegNet for accurate and efficient crowd counting. Inspired by SFANet, the first model, which is named M-SFANet, is attached with atrous spatial pyramid pooling (ASPP) and context-aware module (CAN). The encoder of M-SFANet is enhanced with ASPP containing parallel atrous convolutional layers with different sampling rates and hence able to extract multi-scale features of the target object and incorporate larger context. To further deal with scale variation throughout an input image, we leverage the CAN module which adaptively encodes the scales of the contextual information. The combination yields an effective model for counting in both dense and sparse crowd scenes. Based on the SFANet decoder structure, M-SFANet's decoder has dual paths, for density map and attention map generation. The second model is called M-SegNet, which is produced by replacing the bilinear upsampling in SFANet with max unpooling that is used in SegNet. This change provides a faster model while providing competitive counting performance. Designed for high-speed surveillance applications, M-SegNet has no additional multi-scale-aware module in order to not increase the complexity. Both models are encoder-decoder based architectures and are end-to-end trainable. We conduct extensive experiments on five crowd counting datasets and one vehicle counting dataset to show that these modifications yield algorithms that could improve state-of-the-art crowd counting methods.

Semantic Segmentation of Breast Ultrasound Image with Pyramid Fuzzy Uncertainty Reduction and Direction Connectedness Feature

Kuan Huang, Yingtao Zhang, Heng-Da Cheng, Ping Xing, Boyu Zhang

Auto-TLDR; Uncertainty-Based Deep Learning for Breast Ultrasound Image Segmentation

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Deep learning approaches have achieved impressive results in breast ultrasound (BUS) image segmentation. However, these methods did not solve uncertainty and noise in BUS images well. To address this issue, we present a novel deep learning structure for BUS image semantic segmentation by analyzing the uncertainty using a pyramid fuzzy block and generating a novel feature based on connectedness. Firstly, feature maps in the proposed network are down-sampled to different resolutions. Fuzzy transformation and uncertainty representation are applied to each resolution to obtain the uncertainty degree on different scales. Meanwhile, the BUS images contain layer structures. From top to bottom, there are skin layer, fat layer, mammary layer, muscle layer, and background area. A spatial recurrent neural network (RNN) is utilized to calculate the connectedness between each pixel and the pixels on the four boundaries in horizontal and vertical lines. The spatial-wise context feature can introduce the characteristic of layer structure to deep neural network. Finally, the original convolutional features are combined with connectedness feature according to the uncertainty degrees. The proposed methods are applied to two datasets: a BUS image benchmark with two categories (background and tumor) and a five-category BUS image dataset with fat layer, mammary layer, muscle layer, background, and tumor. The proposed method achieves the best results on both datasets compared with eight state-of-the-art deep learning-based approaches.

End-To-End Multi-Task Learning for Lung Nodule Segmentation and Diagnosis

Wei Chen, Qiuli Wang, Dan Yang, Xiaohong Zhang, Chen Liu, Yucong Li

Auto-TLDR; A novel multi-task framework for lung nodule diagnosis based on deep learning and medical features

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Computer-Aided Diagnosis (CAD) systems for lung nodule diagnosis based on deep learning have attracted much attention in recent years. However, most existing methods ignore the relationships between the segmentation and classification tasks, which leads to unstable performances. To address this problem, we propose a novel multi-task framework, which can provide lung nodule segmentation mask, malignancy prediction, and medical features for interpretable diagnosis at the same time. Our framework mainly contains two sub-network: (1) Multi-Channel Segmentation Sub-network (MSN) for lung nodule segmentation, and (2) Joint Classification Sub-network (JCN) for interpretable lung nodule diagnosis. In the proposed framework, we use U-Net down-sampling processes for extracting low-level deep learning features, which are shared by two sub-networks. The JCN forces the down-sampling processes to learn better lowlevel deep features, which lead to a better construct of segmentation masks. Meanwhile, two additional channels constructed by OTSU and super-pixel (SLIC) methods, are utilized as the guideline of the feature extraction. The proposed framework takes advantages of deep learning methods and classical methods, which can significantly improve the performances of all tasks. We evaluate the proposed framework on public dataset LIDCIDRI. Our framework achieves a promising Dice score of 86.43% in segmentation, 87.07% in malignancy level prediction, and convincing results in interpretable medical feature predictions.

Real-Time Semantic Segmentation Via Region and Pixel Context Network

Yajun Li, Yazhou Liu, Quansen Sun

Auto-TLDR; A Dual Context Network for Real-Time Semantic Segmentation

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Real-time semantic segmentation is a challenging task as both segmentation accuracy and inference speed need to be considered at the same time. In this paper, we present a Dual Context Network (DCNet) to address this challenge. It contains two independent sub-networks: Region Context Network and Pixel Context Network. Region Context Network is main network with low-resolution input and feature re-weighting module to achieve sufficient receptive field. Meanwhile, Pixel Context Network with location attention module to capture the location dependencies of each pixel for assisting the main network to recover spatial detail. A contextual feature fusion is introduced to combine output features of these two sub-networks. The experiments show that DCNet can achieve high-quality segmentation while keeping a high speed. Specifically, for Cityscapes test dataset, we achieve 76.1% Mean IOU with the speed of 82 FPS on a single GTX 2080Ti GPU when using ResNet50 as backbone, and 71.2% Mean IOU with the speed of 142 FPS when using ResNet18 as backbone.

One-Stage Multi-Task Detector for 3D Cardiac MR Imaging

Weizeng Lu, Xi Jia, Wei Chen, Nicolò Savioli, Antonio De Marvao, Linlin Shen, Declan O'Regan, Jinming Duan

Auto-TLDR; Multi-task Learning for Real-Time, simultaneous landmark location and bounding box detection in 3D space

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Fast and accurate landmark location and bounding box detection are important steps in 3D medical imaging. In this paper, we propose a novel multi-task learning framework, for real-time, simultaneous landmark location and bounding box detection in 3D space. Our method extends the famous single-shot multibox detector (SSD) from single-task learning to multi-task learning and from 2D to 3D. Furthermore, we propose a post-processing approach to refine the network landmark output, by averaging the candidate landmarks. Owing to these settings, the proposed framework is fast and accurate. For 3D cardiac magnetic resonance (MR) images with size 224 × 224 × 64, our framework runs about 128 volumes per second (VPS) on GPU and achieves 6.75mm average point-to-point distance error for landmark location, which outperforms both state-of-the-art and baseline methods. We also show that segmenting the 3D image cropped with the bounding box results in both improved performance and efficiency.

GSTO: Gated Scale-Transfer Operation for Multi-Scale Feature Learning in Semantic Segmentation

Zhuoying Wang, Yongtao Wang, Zhi Tang, Yangyan Li, Ying Chen, Haibin Ling, Weisi Lin

Auto-TLDR; Gated Scale-Transfer Operation for Semantic Segmentation

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Existing CNN-based methods for semantic segmentation heavily depend on multi-scale features to meet the requirements of both semantic comprehension and detail preservation. State-of-the-art segmentation networks widely exploit conventional scale-transfer operations, i.e., up-sampling and down-sampling to learn multi-scale features. In this work, we find that these operations lead to scale-confused features and suboptimal performance because they are spatial-invariant and directly transit all feature information cross scales without spatial selection. To address this issue, we propose the Gated Scale-Transfer Operation (GSTO) to properly transit spatial-filtered features to another scale. Specifically, GSTO can work either with or without extra supervision. Unsupervised GSTO is learned from the feature itself while the supervised one is guided by the supervised probability matrix. Both forms of GSTO are lightweight and plug-and-play, which can be flexibly integrated into networks or modules for learning better multi-scale features. In particular, by plugging GSTO into HRNet, we get a more powerful backbone (namely GSTO-HRNet) for pixel labeling, and it achieves new state-of-the-art results on multiple benchmarks for semantic segmentation including Cityscapes, LIP and Pascal Context, with negligible extra computational cost. Moreover, experiment results demonstrate that GSTO can also significantly boost the performance of multi-scale feature aggregation modules like PPM and ASPP.

Multi-Scale Residual Pyramid Attention Network for Monocular Depth Estimation

Jing Liu, Xiaona Zhang, Zhaoxin Li, Tianlu Mao

Auto-TLDR; Multi-scale Residual Pyramid Attention Network for Monocular Depth Estimation

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Monocular depth estimation is a challenging problem in computer vision and is crucial for understanding 3D scene geometry. Recently, deep convolutional neural networks (DCNNs) based methods have improved the estimation accuracy significantly. However, existing methods fail to consider complex textures and geometries in scenes, thereby resulting in loss of local details, distorted object boundaries, and blurry reconstruction. In this paper, we proposed an end-to-end Multi-scale Residual Pyramid Attention Network (MRPAN) to mitigate these problems.First,we propose a Multi-scale Attention Context Aggregation (MACA) module, which consists of Spatial Attention Module (SAM) and Global Attention Module (GAM). By considering the position and scale correlation of pixels from spatial and global perspectives, the proposed module can adaptively learn the similarity between pixels so as to obtain more global context information of the image and recover the complex structure in the scene. Then we proposed an improved Residual Refinement Module (RRM) to further refine the scene structure, giving rise to deeper semantic information and retain more local details. Experimental results show that our method achieves more promisin performance in object boundaries and local details compared with other state-of-the-art methods.

Semantic Segmentation Refinement Using Entropy and Boundary-guided Monte Carlo Sampling and Directed Regional Search

Zitang Sun, Sei-Ichiro Kamata, Ruojing Wang, Weili Chen

Auto-TLDR; Directed Region Search and Refinement for Semantic Segmentation

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Semantic segmentation requires both large receptive field and accurate spatial information. Despite existing methods based on fully convolutional network have greatly improved the accuracy, the prediction results still do not show satisfactory on small objects and boundary regions. We propose a refinement algorithm to improve the result generated by front network. Our method takes a modified U-shape network to generate both of segmentation mask and semantic boundary, which are used as inputs of refinement algorithm. We creatively introduce information entropy to represent the confidence of the neural network's prediction corresponding to each pixel. The information entropy combined with the semantic boundary can capture those unpredictable pixels with low-confidence through Monte Carlo sampling. Each selected pixel will be used as initial seeds for directed region search and refinement. Our purpose is to search the neighbor high-confidence regions according to the initial seeds. The re-labeling approach is based on high-confidence results. Particularly, different from general region growing methods, our method adopts a directed region search strategy based on gradient descent to find the high-confidence region effectively. Our method improves the performance both on Cityscapes and PASCAL VOC datasets. In the evaluation of segmentation accuracy of some small objects, our method surpasses most of state of the art methods.

BiLuNet: A Multi-Path Network for Semantic Segmentation on X-Ray Images

Van Luan Tran, Huei-Yung Lin, Rachel Liu, Chun-Han Tseng, Chun-Han Tseng

Auto-TLDR; BiLuNet: Multi-path Convolutional Neural Network for Semantic Segmentation of Lumbar vertebrae, sacrum,

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Semantic segmentation and shape detection of lumbar vertebrae, sacrum, and femoral heads from clinical X-ray images are important and challenging tasks. In this paper, we propose a new multi-path convolutional neural network, BiLuNet, for semantic segmentation on X-ray images. The network is capable of medical image segmentation with very limited training data. With the shape fitting of the bones, we can identify the location of the target regions very accurately for lumbar vertebra inspection. We collected our dataset and annotated by doctors for model training and performance evaluation. Compared to the state-of-the-art methods, the proposed technique provides better mIoUs and higher success rates with the same training data. The experimental results have demonstrated the feasibility of our network to perform semantic segmentation for lumbar vertebrae, sacrum, and femoral heads.

Single Image Deblurring Using Bi-Attention Network

Yaowei Li, Ye Luo, Jianwei Lu

Auto-TLDR; Bi-Attention Neural Network for Single Image Deblurring

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Recently, deep convolutional neural networks have been extensively applied into image deblurring and have achieved remarkable performance. However, most CNN-based image deblurring methods focus on simply increasing network depth, neglecting the contextual information of the blurred image and the reconstructed image. Meanwhile, most encoder-decoder based methods rarely exploit encoder's multi-layer features. To address these issues, we propose a bi-attention neural network for single image deblurring, which mainly consists of a bi-attention network and a feature fusion network. Specifically, two criss-cross attention modules are plugged before and after the encoder-decoder to capture long-range spatial contextual information in the blurred image and the reconstructed image simultaneously, and the feature fusion network combines multi-layer features from encoder to enable the decoder reconstruct the image with multi-scale features. The whole network is end-to-end trainable. Quantitative and qualitative experiment results validate that the proposed network outperforms state-of-the-art methods in terms of PSNR and SSIM on benchmark datasets.

Coarse to Fine: Progressive and Multi-Task Learning for Salient Object Detection

Dong-Goo Kang, Sangwoo Park, Joonki Paik

Auto-TLDR; Progressive and mutl-task learning scheme for salient object detection

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Most deep learning-based salient object detection (SOD) methods tried to manipulate the convolution block to effectively capture the context of object. In this paper, we propose a novel method, called progressive and mutl-task learning scheme, to extract the context of object by only manipulating the learning scheme without changing the network architecture. The progressive learning scheme is a method to grow the decoder progressively in the train phase. In other words, starting from easier low-resolution layers, it gradually adds high-resolution layers. Although the progressive learning successfullyl captures the context of object, its output boundary tends to be rough. To solve this problem, we also propose a multi-task learning (MTL) scheme that processes the object saliency map and contour in a single network jointly. The proposed MTL scheme trains the network in an edge-preserved direction through an auxiliary branch that learns contours. The proposed a learning scheme can be combined with other convolution block manipulation methods. Extensive experiments on five datasets show that the proposed method performs best compared with state-of-the-art methods in most cases.

A Transformer-Based Network for Anisotropic 3D Medical Image Segmentation

Guo Danfeng, Demetri Terzopoulos

Auto-TLDR; A transformer-based model to tackle the anisotropy problem in 3D medical image analysis

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A critical challenge of applying neural networks to 3D medical image analysis is to deal with the anisotropy problem. The inter-slice contextual information contained in medical images is important, especially when the structural information of lesions is needed. However, such information often varies with cases because of variable slice spacing. Image anisotropy downgrades model performance especially when slice spacing varies significantly among training and testing datasets. ExsiWe proposed a transformer-based model to tackle the anisotropy problem. It is adaptable to different levels of anisotropy and is computationally efficient. Experiments are conducted on 3D lung cancer segmentation task. Our model achieves an average Dice score of approximately 0.87, which generally outperforms baseline models.

Multi-Direction Convolution for Semantic Segmentation

Dehui Li, Zhiguo Cao, Ke Xian, Xinyuan Qi, Chao Zhang, Hao Lu

Auto-TLDR; Multi-Direction Convolution for Contextual Segmentation

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Context is known to be one of crucial factors effecting the performance improvement of semantic segmentation. However, state-of-the-art segmentation models built upon fully convolutional networks are inherently weak in encoding contextual information because of stacked local operations such as convolution and pooling. Failing to capture context leads to inferior segmentation performance. Despite many context modules have been proposed to relieve this problem, they still operate in a local manner or use the same contextual information in different positions (due to upsampling). In this paper, we introduce the idea of Multi-Direction Convolution (MDC)—a novel operator capable of encoding rich contextual information. This operator is inspired by an observation that the standard convolution only slides along the spatial dimension (x, y direction) where the channel dimension (z direction) is fixed, which renders slow growth of the receptive field (RF). If considering the channel-fixed convolution to be one-direction, MDC is multi-direction in the sense that MDC slides along both spatial and channel dimensions, i.e., it slides along x, y when z is fixed, along x, z when y is fixed, and along y, z when x is fixed. In this way, MDC is able to encode rich contextual information with the fast increase of the RF. Compared to existing context modules, the encoded context is position-sensitive because no upsampling is required. MDC is also efficient and easy to implement. It can be implemented with few standard convolution layers with permutation. We show through extensive experiments that MDC effectively and selectively enlarges the RF and outperforms existing contextual modules on two standard benchmarks, including Cityscapes and PASCAL VOC2012.

Offset Curves Loss for Imbalanced Problem in Medical Segmentation

Ngan Le, Duc Toan Bui, Khoa Luu, Marios Savvides

Auto-TLDR; Offset Curves Loss for Medical Image Segmentation

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Medical image segmentation has played an important role in medical analysis and widely developed for many clinical applications. Deep learning-based approaches have achieved high performance in semantic segmentation but they are limited to pixel-wise setting and imbalanced classes data problem. In this paper, we tackle those limitations by developing a new deep learning-based model which takes into account both higher feature level i.e. region inside contour, intermediate feature level i.e. offset curves around the contour and lower feature level i.e. contour. Our proposed Offset Curves (OsC) loss consists of three main fitting terms. The first fitting term focuses on pixel-wise level segmentation whereas the second fitting term acts as attention model which pays attention to the area around the boundaries (offset curves). The third terms plays a role as regularization term which takes the length of boundaries into account. We evaluate our proposed OsC loss on both 2D network and 3D network. Two common medical datasets, i.e. retina DRIVE and brain tumor BRATS 2018 datasets are used to benchmark our proposed loss performance. The experiments have showed that our proposed OsC loss function outperforms other mainstream loss functions such as Cross-Entropy, Dice, Focal on the most common segmentation networks Unet, FCN.

CT-UNet: An Improved Neural Network Based on U-Net for Building Segmentation in Remote Sensing Images

Huanran Ye, Sheng Liu, Kun Jin, Haohao Cheng

Auto-TLDR; Context-Transfer-UNet: A UNet-based Network for Building Segmentation in Remote Sensing Images

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With the proliferation of remote sensing images, how to segment buildings more accurately in remote sensing images is a critical challenge. First, the high resolution leads to blurred boundaries in the extracted building maps. Second, the similarity between buildings and background results in intra-class inconsistency. To address these two problems, we propose an UNet-based network named Context-Transfer-UNet (CT-UNet). Specifically, we design Dense Boundary Block (DBB). Dense Block utilizes reuse mechanism to refine features and increase recognition capabilities. Boundary Block introduces the low-level spatial information to solve the fuzzy boundary problem. Then, to handle intra-class inconsistency, we construct Spatial Channel Attention Block (SCAB). It combines context space information and selects more distinguishable features from space and channel. Finally, we propose a novel loss function to enhance the purpose of loss by adding evaluation indicator. Based on our proposed CT-UNet, we achieve 85.33% mean IoU on the Inria dataset and 91.00% mean IoU on the WHU dataset, which outperforms our baseline (U-Net ResNet-34) by 3.76% and Web-Net by 2.24%.

SFPN: Semantic Feature Pyramid Network for Object Detection

Yi Gan, Wei Xu, Jianbo Su

Auto-TLDR; SFPN: Semantic Feature Pyramid Network to Address Information Dilution Issue in FPN

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Feature Pyramid Network(FPN) employs a top-down path to enhance low level feature by utilizing high level feature.However, further improvement of detector is greatly hindered by the inner defect of FPN. The dilution issue in FPN is analyzed in this paper, and a new architecture named Semantic Feature Pyramid Network(SFPN) is introduced to address the information imbalance problem caused by information dilution. The proposed method consists of two simple and effective components: Semantic Pyramid Module(SPM) and Semantic Feature Fusion Module(SFFM). To compensate for the weaknesses of FPN, the semantic segmentation result is utilized as an extra information source in our architecture.By constructing a semantic pyramid based on the segmentation result and fusing it with FPN, feature maps at each level can obtain the necessary information without suffering from the dilution issue. The proposed architecture could be applied on many detectors, and non-negligible improvement could be achieved. Although this method is designed for object detection, other tasks such as instance segmentation can also largely benefit from it. The proposed method brings Faster R-CNN and Mask R-CNN with ResNet-50 as backbone both 1.8 AP improvements respectively. Furthermore, SFPN improves Cascade R-CNN with backbone ResNet-101 from 42.4 AP to 43.5 AP.

Efficient-Receptive Field Block with Group Spatial Attention Mechanism for Object Detection

Jiacheng Zhang, Zhicheng Zhao, Fei Su

Auto-TLDR; E-RFB: Efficient-Receptive Field Block for Deep Neural Network for Object Detection

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Object detection has been paid rising attention in computer vision field. Convolutional Neural Networks (CNNs) extract high-level semantic features of images, which directly determine the performance of object detection. As a common solution, embedding integration modules into CNNs can enrich extracted features and thereby improve the performance. However, the instability and inconsistency of internal multiple branches exist in these modules. To address this problem, we propose a novel multibranch module called Efficient-Receptive Field Block (E-RFB), in which multiple levels of features are combined for network optimization. Specifically, by downsampling and increasing depth, the E-RFB provides sufficient RF. Second, in order to eliminate the inconsistency across different branches, a novel spatial attention mechanism, namely, Group Spatial Attention Module (GSAM) is proposed. The GSAM gradually narrows a feature map by channel grouping; thus it encodes the information between spatial and channel dimensions into the final attention heat map. Third, the proposed module can be easily joined in various CNNs to enhance feature representation as a plug-and-play component. With SSD-style detectors, our method halves the parameters of the original detection head and achieves high accuracy on the PASCAL VOC and MS COCO datasets. Moreover, the proposed method achieves superior performance compared with state-of-the-art methods based on similar framework.

Video Semantic Segmentation Using Deep Multi-View Representation Learning

Akrem Sellami, Salvatore Tabbone

Auto-TLDR; Deep Multi-view Representation Learning for Video Object Segmentation

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In this paper, we propose a deep learning model based on deep multi-view representation learning, to address the video object segmentation task. The proposed model emphasizes the importance of the inherent correlation between video frames and incorporates a multi-view representation learning based on deep canonically correlated autoencoders. The multi-view representation learning in our model provides an efficient mechanism for capturing inherent correlations by jointly extracting useful features and learning better representation into a joint feature space, i.e., shared representation. To increase the training data and the learning capacity, we train the proposed model with pairs of video frames, i.e., $F_{a}$ and $F_{b}$. During the segmentation phase, the deep canonically correlated autoencoders model encodes useful features by processing multiple reference frames together, which is used to detect the frequently reappearing. Our model enhances the state-of-the-art deep learning-based methods that mainly focus on learning discriminative foreground representations over appearance and motion. Experimental results over two large benchmarks demonstrate the ability of the proposed method to outperform competitive approaches and to reach good performances, in terms of semantic segmentation.

Spatial-Related and Scale-Aware Network for Crowd Counting

Lei Li, Yuan Dong, Hongliang Bai

Auto-TLDR; Spatial Attention for Crowd Counting

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Crowd counting aims to estimate the number of people in images. Although promising progresses have been made with the prevalence of deep Convolutional Neural Networks, there still remains a challenging task due to cluttered backgrounds and varying scales of people within an image. In this paper, we propose a learnable spatial attention module which can get the spatial relations to diminish the negative impact of backgrounds. Besides, a dense hybrid dilated convolution module is also brought up to preserve information derived from varied scales. With these two modules, our network can deal with the problem caused by scale variance and background interference. To demonstrate the effectiveness of our method, we compare it with state-of-the-art algorithms on three representative crowd counting benchmarks (ShanghaiTech UCF-QNRF,UCF_CC_50). Experimental results show that our proposed network can achieve significant improvements on all the three datasets.

RescueNet: Joint Building Segmentation and Damage Assessment from Satellite Imagery

Rohit Gupta, Mubarak Shah

Auto-TLDR; RescueNet: End-to-End Building Segmentation and Damage Classification for Humanitarian Aid and Disaster Response

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Accurate and fine-grained information about the extent of damage to buildings is essential for directing Humanitarian Aid and Disaster Response (HADR) operations in the immediate aftermath of any natural calamity. In recent years, satellite and UAV (drone) imagery has been used for this purpose, sometimes aided by computer vision algorithms. Existing Computer Vision approaches for building damage assessment typically rely on a two stage approach, consisting of building detection using an object detection model, followed by damage assessment through classification of the detected building tiles. These multi-stage methods are not end-to-end trainable, and suffer from poor overall results. We propose RescueNet, a unified model that can simultaneously segment buildings and assess the damage levels to individual buildings and can be trained end-to end. In order to to model the composite nature of this problem, we propose a novel localization aware loss function, which consists of a Binary Cross Entropy loss for building segmentation, and a foreground only selective Categorical Cross-Entropy loss for damage classification, and show significant improvement over the widely used Cross-Entropy loss. RescueNet is tested on the large scale and diverse xBD dataset and achieves significantly better building segmentation and damage classification performance than previous methods and achieves generalization across varied geographical regions and disaster types.

Context-Aware Residual Module for Image Classification

Jing Bai, Ran Chen

Auto-TLDR; Context-Aware Residual Module for Image Classification

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Attention module has achieved great success in numerous vision tasks. However, existing visual attention modules generally consider the features of a single-scale, and cannot make full use of their multi-scale contextual information. Meanwhile, the multi-scale spatial feature representation has demonstrated its outstanding performance in a wide range of applications. However, the multi-scale features are always represented in a layer-wise manner, i.e. it is impossible to know their contextual information at a granular level. Focusing on the above issue, a context-aware residual module for image classification is proposed in this paper. It consists of a novel multi-scale channel attention module MSCAM to learn refined channel weights by considering the visual features of its own scale and its surrounding fields, and a multi-scale spatial aware module MSSAM to further capture more spatial information. Either or both of the two modules can be plugged into any CNN-based backbone image classification architecture with a short residual connection to obtain the context-aware enhanced features. The experiments on public image recognition datasets including CIFAR10, CIFAR100，Tiny-ImageNet and ImageNet consistently demonstrate that our proposed modules significantly outperforms a wide-used state-of-the-art methods, e.g., ResNet and the lightweight networks of MobileNet and SqueezeeNet.