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Merged 1D-2D Deep Convolutional Neural Networks for Nerve Detection in Ultrasound Images

Mohammad Alkhatib, Adel Hafiane, Pierre Vieyres

Auto-TLDR; A Deep Neural Network for Deep Neural Networks to Detect Median Nerve in Ultrasound-Guided Regional Anesthesia

Abstract Slides Poster

Ultrasound-Guided Regional Anesthesia (UGRA) becomes a standard procedure in surgical operations and contributes to pain management. It offers the advantages of the targeted nerve detection and provides the visualization of regions of interest such as anatomical structures. However, nerve detection is one of the most challenging tasks that anesthetists can encounter in the UGRA procedure. A computer-aided system that can detect automatically the nerve region would facilitate the anesthetist's daily routine and allow them to concentrate more on the anesthetic delivery. In this paper, we propose a new method based on merging deep learning models from different data to detect the median nerve. The merged architecture consists of two branches, one being one dimensional (1D) convolutional neural networks (CNN) branch and another 2D CNN branch. The merged architecture aims to learn the high-level features from 1D handcrafted noise-robust features and 2D ultrasound images. The obtained results show the validity and high accuracy of the proposed approach and its robustness.

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Edge-Guided CNN for Denoising Images from Portable Ultrasound Devices

Yingnan Ma, Fei Yang, Anup Basu

Auto-TLDR; Edge-Guided Convolutional Neural Network for Portable Ultrasound Images

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Ultrasound is a non-invasive tool that is useful for medical diagnosis and treatment. To reduce long wait times and add convenience to patients, portable ultrasound scanning devices are becoming increasingly popular. These devices can be held in one palm, and are compatible with modern cell phones. However, the quality of ultrasound images captured from the portable scanners is relatively poor compared to standard ultrasound scanning systems in hospitals. To improve the quality of the ultrasound images obtained from portable ultrasound devices, we propose a new neural network architecture called Edge-Guided Convolutional Neural Network (EGCNN), which can preserve significant edge information in ultrasound images when removing noise. We also study and compare the effectiveness of classical filtering approaches in removing speckle noise in these images. Experimental results show that after applying the proposed EGCNN, various organs can be better recognized from ultrasound images. This approach is expected to lead to better accuracy in diagnostics in the future.

A Lumen Segmentation Method in Ureteroscopy Images Based on a Deep Residual U-Net Architecture

Jorge Lazo, Marzullo Aldo, Sara Moccia, Michele Catellani, Benoit Rosa, Elena De Momi, Michel De Mathelin, Francesco Calimeri

Auto-TLDR; A Deep Neural Network for Ureteroscopy with Residual Units

Abstract Slides Poster Similar

Ureteroscopy is becoming the first surgical treatment option for the majority of urinary affections. This procedure is carried out using an endoscope which provides the surgeon with the visual and spatial information necessary to navigate inside the urinary tract. Having in mind the development of surgical assistance systems, that could enhance the performance of surgeon, the task of lumen segmentation is a fundamental part since this is the visual reference which marks the path that the endoscope should follow. This is something that has not been analyzed in ureteroscopy data before. However, this task presents several challenges given the image quality and the conditions itself of ureteroscopy procedures. In this paper, we study the implementation of a Deep Neural Network which exploits the advantage of residual units in an architecture based on U-Net. For the training of these networks, we analyze the use of two different color spaces: gray-scale and RGB data images. We found that training on gray-scale images gives the best results obtaining mean values of Dice Score, Precision, and Recall of 0.73, 0.58, and 0.92 respectively. The results obtained show that the use of residual U-Net could be a suitable model for further development for a computer-aided system for navigation and guidance through the urinary system.

Automatic Semantic Segmentation of Structural Elements related to the Spinal Cord in the Lumbar Region by Using Convolutional Neural Networks

Jhon Jairo Sáenz Gamboa, Maria De La Iglesia-Vaya, Jon Ander Gómez

Auto-TLDR; Semantic Segmentation of Lumbar Spine Using Convolutional Neural Networks

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This work addresses the problem of automatically segmenting the MR images corresponding to the lumbar spine. The purpose is to detect and delimit the different structural elements like vertebrae, intervertebral discs, nerves, blood vessels, etc. This task is known as semantic segmentation. The approach proposed in this work is based on convolutional neural networks whose output is a mask where each pixel from the input image is classified into one of the possible classes. Classes were defined by radiologists and correspond to structural elements and tissues. The proposed network architectures are variants of the U-Net. Several complementary blocks were used to define the variants: spatial attention models, deep supervision and multi-kernels at input, this last block type is based on the idea of inception. Those architectures which got the best results are described in this paper, and their results are discussed. Two of the proposed architectures outperform the standard U-Net used as baseline.

A Systematic Investigation on Deep Architectures for Automatic Skin Lesions Classification

Pierluigi Carcagni, Marco Leo, Andrea Cuna, Giuseppe Celeste, Cosimo Distante

Auto-TLDR; RegNet: Deep Investigation of Convolutional Neural Networks for Automatic Classification of Skin Lesions

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Computer vision-based techniques are more and more employed in healthcare and medical fields nowadays in order, principally, to be as a support to the experienced medical staff to help them to make a quick and correct diagnosis. One of the hot topics in this arena concerns the automatic classification of skin lesions. Several promising works exist about it, mainly leveraging Convolutional Neural Networks (CNN), but proposed pipeline mainly rely on complex data preprocessing and there is no systematic investigation about how available deep models can actually reach the accuracy needed for real applications. In order to overcome these drawbacks, in this work, an end-to-end pipeline is introduced and some of the most recent Convolutional Neural Networks (CNNs) architectures are included in it and compared on the largest common benchmark dataset recently introduced. To this aim, for the first time in this application context, a new network design paradigm, namely RegNet, has been exploited to get the best models among a population of configurations. The paper introduces a threefold level of contribution and novelty with respect the previous literature: the deep investigation of several CNN architectures driving to a consistent improvement of the lesions recognition accuracy, the exploitation of a new network design paradigm able to study the behavior of populations of models and a deep discussion about pro and cons of each analyzed method paving the path towards new research lines.

DE-Net: Dilated Encoder Network for Automated Tongue Segmentation

Hui Tang, Bin Wang, Jun Zhou, Yongsheng Gao

Auto-TLDR; Automated Tongue Image Segmentation using De-Net

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Automated tongue recognition is a growing research field due to global demand for personal health care. Using mobile devices to take tongue pictures is convenient and of low cost for tongue recognition. It is particularly suitable for self-health evaluation of the public. However, images taken by mobile devices are easily affected by various imaging environment, which makes fine segmentation a more challenging task compared with those taken by specialized acquisition devices. Deep learning approaches are promising for tongue image segmentation because they have powerful feature learning and representation capability. However, the successive pooling operations in these methods lead to loss of information on image details, making them fail when segmenting low-quality images captured by mobile devices. To address this issue, we propose a dilated encoder network (DE-Net) to capture more high-level features and get high-resolution output for automated tongue image segmentation. In addition, we construct two tongue image datasets which contain images taken by specialized devices and mobile devices, respectively, to verify the effectiveness of the proposed method. Experimental results on both datasets demonstrate that the proposed method outperforms the state-of-the-art methods in tongue image segmentation.

A Comparison of Neural Network Approaches for Melanoma Classification

Maria Frasca, Michele Nappi, Michele Risi, Genoveffa Tortora, Alessia Auriemma Citarella

Auto-TLDR; Classification of Melanoma Using Deep Neural Network Methodologies

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Melanoma is the deadliest form of skin cancer and it is diagnosed mainly visually, starting from initial clinical screening and followed by dermoscopic analysis, biopsy and histopathological examination. A dermatologist’s recognition of melanoma may be subject to errors and may take some time to diagnose it. In this regard, deep learning can be useful in the study and classification of skin cancer. In particular, by classifying images with Deep Neural Network methodologies, it is possible to obtain comparable or even superior results compared to those of dermatologists. In this paper, we propose a methodology for the classification of melanoma by adopting different deep learning techniques applied to a common dataset, composed of images from the ISIC dataset and consisting of different types of skin diseases, including melanoma on which we applied a specific pre-processing phase. In particular, a comparison of the results is performed in order to select the best effective neural network to be applied to the problem of recognition and classification of melanoma. Moreover, we also evaluate the impact of the pre- processing phase on the final classification. Different metrics such as accuracy, sensitivity, and specificity have been selected to assess the goodness of the adopted neural networks and compare them also with the manual classification of dermatologists.

A Benchmark Dataset for Segmenting Liver, Vasculature and Lesions from Large-Scale Computed Tomography Data

Bo Wang, Zhengqing Xu, Wei Xu, Qingsen Yan, Liang Zhang, Zheng You

Auto-TLDR; The Biggest Treatment-Oriented Liver Cancer Dataset for Segmentation

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How to build a high-performance liver-related computer assisted diagnosis system is an open question of great interest. However, the performance of the state-of-art algorithm is always limited by the amount of data and quality of the label. To address this problem, we propose the biggest treatment-oriented liver cancer dataset for liver surgery and treatment planning. This dataset provides 216 cases (totally about 268K frames) scanned images in contrast-enhanced computed tomography (CT). We labeled all the CT images with the liver, liver vasculature and liver tumor segmentation ground truth for train and tune segmentation algorithms in advance. Based on that, we evaluate several recent and state-of-the-art segmentation algorithms, including 7 deep learning methods, on CT sequences. All results are compared to reference segmentations five error metrics that highlight different aspects of segmentation accuracy. In general, compared with previous datasets, our dataset is really a challenging dataset. To our knowledge, the proposed dataset and benchmark allow for the first time systematic exploration of such issues, and will be made available to allow for further research in this field.

Confidence Calibration for Deep Renal Biopsy Immunofluorescence Image Classification

Federico Pollastri, Juan Maroñas, Federico Bolelli, Giulia Ligabue, Roberto Paredes, Riccardo Magistroni, Costantino Grana

Auto-TLDR; A Probabilistic Convolutional Neural Network for Immunofluorescence Classification in Renal Biopsy

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With this work we tackle immunofluorescence classification in renal biopsy, employing state-of-the-art Convolutional Neural Networks. In this setting, the aim of the probabilistic model is to assist an expert practitioner towards identifying the location pattern of antibody deposits within a glomerulus. Since modern neural networks often provide overconfident outputs, we stress the importance of having a reliable prediction, demonstrating that Temperature Scaling, a recently introduced re-calibration technique, can be successfully applied to immunofluorescence classification in renal biopsy. Experimental results demonstrate that the designed model yields good accuracy on the specific task, and that Temperature Scaling is able to provide reliable probabilities, which are highly valuable for such a task given the low inter-rater agreement.

Mobile Phone Surface Defect Detection Based on Improved Faster R-CNN

Tao Wang, Can Zhang, Runwei Ding, Ge Yang

Auto-TLDR; Faster R-CNN for Mobile Phone Surface Defect Detection

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Various surface defects will inevitably occur in the production process of mobile phones, which have a huge impact on the enterprise. Therefore, precise defect detection is of great significance in the production of mobile phones. However, the traditional manual inspection and machine vision inspection have low efficiency and accuracy respectively which cannot meet the rapid production needs of modern enterprises. In this paper, we proposed a mobile phone surface defect (MPSD) detection model based on deep learning, which greatly reduce the requirement of a large dataset and improve detection performance. First, Boundary Equilibrium Generative Adversarial Networks (BEGAN) is used to generate and augment the defect data. Then, based on Faster R-CNN model, Feature Pyramid Network (FPN) and ResNet 101 are combined as feature extraction network to get more small target defect features. Further, replacing the ROI pooling layer with an ROI Align layer reduces the quantization deviation during the pooling process. Finally, we train and evaluate our model on our own dataset. The experimental results indicate that compared with some traditional methods based on handcrafted feature extraction and the traditional Faster R-CNN, the improved Faster R-CNN achieves 99.43% mAP, which is more effective in MPSD defect detection area.

Fine-Tuning Convolutional Neural Networks: A Comprehensive Guide and Benchmark Analysis for Glaucoma Screening

Amed Mvoulana, Rostom Kachouri, Mohamed Akil

Auto-TLDR; Fine-tuning Convolutional Neural Networks for Glaucoma Screening

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This work aimed at giving a comprehensive and in-detailed guide on the route to fine-tuning Convolutional Neural Networks (CNNs) for glaucoma screening. Transfer learning consists in a promising alternative to train CNNs from stratch, to avoid the huge data and resources requirements. After a thorough study of five state-of-the-art CNNs architectures, a complete and well-explained strategy for fine-tuning these networks is proposed, using hyperparameter grid-searching and two-phase training approach. Excellent performance is reached on model evaluation, with a 0.9772 AUROC validation rate, giving arise to reliable glaucoma diagosis-help systems. Also, a benchmark analysis is conducted across all fine-tuned models, studying them according to performance indices such as model complexity and size, AUROC density and inference time. This in-depth analysis allows a rigorous comparison between model characteristics, and is useful for giving practioners important trademarks for prospective applications and deployments.

Documents Counterfeit Detection through a Deep Learning Approach

Darwin Danilo Saire Pilco, Salvatore Tabbone

Auto-TLDR; End-to-End Learning for Counterfeit Documents Detection using Deep Neural Network

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The main topic of this work is on the detection of counterfeit documents and especially banknotes. We propose an end-to-end learning model using a deep learning approach based on Adapnet++ which manages feature extraction at multiple scale levels using several residual units. Unlike previous models based on regions of interest (ROI) and high-resolution documents, our network is feed with simple input images (i.e., a single patch) and we do not need high resolution images. Besides, discriminative regions can be visualized at different scales. Our network learns by itself which regions of interest predict the better results. Experimental results show that we are competitive compared with the state-of-the-art and our deep neural network has good ability to generalize and can be applied to other kind of documents like identity or administrative one.

Detecting Anomalies from Video-Sequences: A Novel Descriptor

Giulia Orrù, Davide Ghiani, Maura Pintor, Gian Luca Marcialis, Fabio Roli

Auto-TLDR; Trit-based Measurement of Group Dynamics for Crowd Behavior Analysis and Anomaly Detection

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We present a novel descriptor for crowd behavior analysis and anomaly detection. The goal is to measure by appropriate patterns the speed of formation and disintegration of groups in the crowd. This descriptor is inspired by the concept of one-dimensional local binary patterns: in our case, such patterns depend on the number of group observed in a time window. An appropriate measurement unit, named "trit" (trinary digit), represents three possible dynamic states of groups on a certain frame. Our hypothesis is that abrupt variations of the groups' number may be due to an anomalous event that can be accordingly detected, by translating these variations on temporal trit-based sequence of strings which are significantly different from the one describing the "no-anomaly" one. Due to the peculiarity of the rationale behind this work, relying on the number of groups, three different methods of people group's extraction are compared. Experiments are carried out on the Motion-Emotion benchmark data set. Reported results point out in which cases the trit-based measurement of group dynamics allows us to detect the anomaly. Besides the promising performance of our approach, we show how it is correlated with the anomaly typology and the camera's perspective to the crowd's flow (frontal, lateral).

Dual Encoder Fusion U-Net (DEFU-Net) for Cross-manufacturer Chest X-Ray Segmentation

Zhang Lipei, Aozhi Liu, Jing Xiao

Auto-TLDR; Inception Convolutional Neural Network with Dilation for Chest X-Ray Segmentation

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A number of methods based on the deep learning have been applied to medical image segmentation and have achieved state-of-the-art performance. The most famous technique is U-Net which has been used to many medical datasets including the Chest X-ray. Due to the importance of chest x- ray data in studying COVID-19, there is a demand for state-of- art models capable of precisely segmenting chest x-rays. In this paper, we propose a dual encoder fusion U-Net framework for Chest X-rays based on Inception Convolutional Neural Network with dilation, Densely Connected Recurrent Convolutional Neural Network, which is named DEFU-Net. The densely connected recurrent path extends the network deeper for facilitating context feature extraction. In order to increase the width of network and enrich representation of features, the inception blocks with dilation have been used. The inception blocks can capture globally and locally spatial information with various receptive fields to avoid information loss caused by max-pooling. Meanwhile, the features fusion of two path by summation preserve the context and the spatial information for decoding part. We applied this model in Chest X-ray dataset from two different manufacturers (Montgomery and Shenzhen hospital). The DEFU-Net achieves the better performance than basic U-Net, residual U-Net, BCDU- Net, R2U-Net and attention R2U-Net. This model approaches state-of-the-art in this mixed dataset. The open source code for this proposed framework is public available.

Improving Batch Normalization with Skewness Reduction for Deep Neural Networks

Pak Lun Kevin Ding, Martin Sarah, Baoxin Li

Auto-TLDR; Batch Normalization with Skewness Reduction

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Batch Normalization (BN) is a well-known technique used in training deep neural networks. The main idea behind batch normalization is to normalize the features of the layers ($i.e.$, transforming them to have a mean equal to zero and a variance equal to one). Such a procedure encourages the optimization landscape of the loss function to be smoother, and improve the learning of the networks for both speed and performance. In this paper, we demonstrate that the performance of the network can be improved, if the distributions of the features of the output in the same layer are similar. As normalizing based on mean and variance does not necessarily make the features to have the same distribution, we propose a new normalization scheme: Batch Normalization with Skewness Reduction (BNSR). Comparing with other normalization approaches, BNSR transforms not just only the mean and variance, but also the skewness of the data. By tackling this property of a distribution, we are able to make the output distributions of the layers to be further similar. The nonlinearity of BNSR may further improve the expressiveness of the underlying network. Comparisons with other normalization schemes are tested on the CIFAR-100 and ImageNet datasets. Experimental results show that the proposed approach can outperform other state-of-the-arts that are not equipped with BNSR.

Motion U-Net: Multi-Cue Encoder-Decoder Network for Motion Segmentation

Gani Rahmon, Filiz Bunyak, Kannappan Palaniappan

Auto-TLDR; Motion U-Net: A Deep Learning Framework for Robust Moving Object Detection under Challenging Conditions

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Detection of moving objects is a critical first step in many computer vision applications. Several algorithms for motion and change detection were proposed. However, many of these approaches lack the ability to handle challenging real-world scenarios. Recently, deep learning approaches started to produce impressive solutions to computer vision tasks, particularly for detection and segmentation. Many existing deep learning networks proposed for moving object detection rely only on spatial appearance cues. In this paper, we propose a novel multi-cue and multi-stream network, Motion U-Net (MU-Net), which integrates motion, change, and appearance cues using a deep learning framework for robust moving object detection under challenging conditions. The proposed network consists of a two-stream encoder module followed by feature concatenation and a decoder module. Motion and change cues are computed through our tensor-based motion estimation and a multi-modal background subtraction modules. The proposed system was tested and evaluated on the change detection challenge datasets (CDnet-2014) and compared to state-of-the-art methods. On CDnet-2014 dataset, our approach reaches an average overall F-measure of 0.9852 and outperforms all current state-of-the-art methods. The network was also tested on the unseen SBI-2015 dataset and produced promising results.

Multi-Scale and Attention Based ResNet for Heartbeat Classification

Haojie Zhang, Gongping Yang, Yuwen Huang, Feng Yuan, Yilong Yin

Auto-TLDR; A Multi-Scale and Attention based ResNet for ECG heartbeat classification in intra-patient and inter-patient paradigms

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This paper presents a novel deep learning framework for the electrocardiogram (ECG) heartbeat classification. Although there have been some studies with excellent overall accuracy, these studies have not been very accurate in the diagnosis of arrhythmia classes especially such as supraventricular ectopic beat (SVEB) and ventricular ectopic beat (VEB). In our work, we propose a Multi-Scale and Attention based ResNet for heartbeat classification in intra-patient and inter-patient paradigms respectively. Firstly, we extract shallow features from a convolutional layer. Secondly, the shallow features are sent into three branches with different convolution kernels in order to combine receptive fields of different sizes. Finally, fully connected layers are used to classify the heartbeat. Besides, we design a new attention mechanism based on the characteristics of heartbeat data. At last, extensive experiments on benchmark dataset demonstrate the effectiveness of our proposed model.

Breast Anatomy Enriched Tumor Saliency Estimation

Fei Xu, Yingtao Zhang, Heng-Da Cheng, Jianrui Ding, Boyu Zhang, Chunping Ning, Ying Wang

Auto-TLDR; Tumor Saliency Estimation for Breast Ultrasound using enriched breast anatomy knowledge

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Breast cancer investigation is of great significance and developing tumor detection methodologies is a critical need. However, it is a challenging task for breast cancer detection using breast ultrasound (BUS) images due to the complicated breast structure and poor quality of the images. In this paper, we propose a novel tumor saliency estimation (TSE) model guided by enriched breast anatomy knowledge to localize the tumor. First, the breast anatomy layers are generated by a deep neural network. Then we refine the layers by integrating a non-semantic breast anatomy model to solve the problems of incomplete mammary layers. Meanwhile, a new background map generation method weighted by the semantic probability and spatial distance is proposed to improve the performance. The experiment demonstrates that the proposed method with the new background map outperforms four state-of-the-art TSE models with increasing 10% of F_meansure on the public BUS dataset.

FOANet: A Focus of Attention Network with Application to Myocardium Segmentation

Zhou Zhao, Elodie Puybareau, Nicolas Boutry, Thierry Geraud

Auto-TLDR; FOANet: A Hybrid Loss Function for Myocardium Segmentation of Cardiac Magnetic Resonance Images

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In myocardium segmentation of cardiac magnetic resonance images, ambiguities often appear near the boundaries of the target domains due to tissue similarities. To address this issue, we propose a new architecture, called FOANet, which can be decomposed in three main steps: a localization step, a Gaussian-based contrast enhancement step, and a segmentation step. This architecture is supplied with a hybrid loss function that guides the FOANet to study the transformation relationship between the input image and the corresponding label in a threelevel hierarchy (pixel-, patch- and map-level), which is helpful to improve segmentation and recovery of the boundaries. We demonstrate the efﬁciency of our approach on two public datasets in terms of regional and boundary segmentations.

Cross-View Relation Networks for Mammogram Mass Detection

Ma Jiechao, Xiang Li, Hongwei Li, Ruixuan Wang, Bjoern Menze, Wei-Shi Zheng

Auto-TLDR; Multi-view Modeling for Mass Detection in Mammogram

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In medical image analysis, multi-view modeling is crucial for pathology detection when the target lesion is presented in different views, e.g. mass lesions in breast. Currently mammogram is the most effective imaging modality for mass lesion detection of breast cancer at the early stage. The pathological information from the two paired views (i.e., medio-lateral oblique and cranio-caudal) are highly relational and complementary, which is crucial for diagnosis in clinical practice. Existing mass detection methods do not consider learning synergistic features from the two relational views. For the first time, we propose a novel mass detection framework to capture the latent relation information from the two paired views of a same mass in mammogram. We evaluate our model on a public mammogram dataset and a large-scale private dataset, demonstrating that the proposed method outperforms existing feature fusion approaches and state-of-the-art mass detection methods. We further analyze the performance gains from the relation modeling. Our quantitative and qualitative results suggest that jointly learning cross-view features boosts the detection performance of existing models, which is a promising avenue for mass detection task in mammogram.

Deep Learning in the Ultrasound Evaluation of Neonatal Respiratory Status

Michela Gravina, Diego Gragnaniello, Giovanni Poggi, Luisa Verdoliva, Carlo Sansone, Iuri Corsini, Carlo Dani, Fabio Meneghin, Gianluca Lista, Salvatore Aversa, Migliaro Migliaro, Raimondi Francesco

Auto-TLDR; Lung Ultrasound Imaging with Deep Learning Networks and Training Strategies: An Analysis and Adaptation

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Lung ultrasound imaging is reaching growing interest from the scientific community. On one side, thanks to its harmlessness and high descriptive power, this kind of diagnostic imaging became largely adopted in sensitive applications, like the diagnosis and follow-up of preterm newborns in neonatal intensive care units. At the same time, novel image analysis and pattern recognition approaches can fully exploit the rich information contained in this data, making them attractive for the research community. In this work, we present a thorough analysis of recent deep learning networks and training strategies conducted on a vast and challenging multicenter dataset comprising 87 patients with different diseases and gestational ages. These approaches are firstly discussed in the context of lung respiratory status assessing through ultrasound imaging and then evaluated against a reference marker. The conducted analysis shed some light on this problem, by relating the criticisms that can mislead the training procedure and proposing some adaptations to the specific problem. The achieved results sensibly outperform that obtained by previous work, based on textural features, and narrow the gap with the visual score predicted by the human experts.

Facial Expression Recognition Using Residual Masking Network

Luan Pham, Vu Huynh, Tuan Anh Tran

Auto-TLDR; Deep Residual Masking for Automatic Facial Expression Recognition

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Automatic facial expression recognition (FER) has gained much attention due to its applications in human-computer interaction. Among the approaches to improve FER tasks, this paper focuses on deep architecture with the attention mechanism. We propose a novel Masking idea to boost the performance of CNN in facial expression task. It uses a segmentation network to refine feature maps, enabling the network to focus on relevant information to make correct decisions. In experiments, we combine the ubiquitous Deep Residual Network and Unet-like architecture to produce a Residual Masking Network. The proposed method holds state-of-the-art (SOTA) accuracy on the well-known FER2013 and private VEMO datasets. Our works are available on Github.

DA-RefineNet: Dual-Inputs Attention RefineNet for Whole Slide Image Segmentation

Ziqiang Li, Rentuo Tao, Qianrun Wu, Bin Li

Auto-TLDR; DA-RefineNet: A dual-inputs attention network for whole slide image segmentation

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Automatic medical image segmentation techniques have wide applications for disease diagnosing, however, its much more challenging than natural optical image segmentation tasks due to the high-resolution of medical images and the corresponding huge computation cost. Sliding window was a commonly used technique for whole slide image (WSI) segmentation, however, for these methods that based on sliding window, the main drawback was lacking of global contextual information for supervision. In this paper, we proposed a dual-inputs attention network (denoted as DA-RefineNet) for WSI segmentation, where both local fine-grained information and global coarse information can be efficiently utilized. Sufficient comparative experiments were conducted to evaluate the effectiveness of the proposed method, the results proved that the proposed method can achieve better performance on WSI segmentation tasks compared to methods rely on single-input.

Planar 3D Transfer Learning for End to End Unimodal MRI Unbalanced Data Segmentation

Martin Kolarik, Radim Burget, Carlos M. Travieso-Gonzalez, Jan Kocica

Auto-TLDR; Planar 3D Res-U-Net Network for Unbalanced 3D Image Segmentation using Fluid Attenuation Inversion Recover

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We present a novel approach of 2D to 3D transfer learning based on mapping pre-trained 2D convolutional neural network weights into planar 3D kernels. The method is validated by proposed planar 3D res-u-net network with encoder transferred from the 2D VGG-16 which is applied for a single-stage unbalanced 3D image data segmentation. In particular, we evaluate the method on the MICCAI 2016 MS lesion segmentation challenge dataset utilizing solely Fluid Attenuation Inversion Recover (FLAIR) sequence without brain extraction for training and inference to simulate real medical praxis. The planar 3D res-u-net network performed the best both in sensitivity and Dice score amongst end to end methods processing raw MRI scans and achieved comparable Dice score to a state-of-the-art unimodal not end to end approach. Complete source code was released under the open-source license and this paper is in compliance with the Machine learning Reproducibility Checklist. By implementing practical transfer learning for 3D data representation we were able to successfully segment heavily unbalanced data without selective sampling and achieved more reliable results using less training data in single modality. From medical perspective, the unimodal approach gives an advantage in real praxis as it does not require co-registration nor additional scanning time during examination. Although modern medical imaging methods capture high resolution 3D anatomy scans suitable for computer aided detection system processing, deployment of automatic systems for interpretation of radiology imaging is still rather theoretical in many medical areas. Our work aims to bridge the gap offering solution for partial research questions.

Triplet-Path Dilated Network for Detection and Segmentation of General Pathological Images

Jiaqi Luo, Zhicheng Zhao, Fei Su, Limei Guo

Auto-TLDR; Triplet-path Network for One-Stage Object Detection and Segmentation in Pathological Images

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Deep learning has been widely applied in the field of medical image processing. However, compared with flourishing visual tasks in natural images, the progress achieved in pathological images is not remarkable, and detection and segmentation, which are among basic tasks of computer vision, are regarded as two independent tasks. In this paper, we make full use of existing datasets and construct a triplet-path network using dilated convolutions to cooperatively accomplish one-stage object detection and nuclei segmentation for general pathological images. First, in order to meet the requirement of detection and segmentation, a novel structure called triplet feature generation (TFG) is designed to extract high-resolution and multiscale features, where features from different layers can be properly integrated. Second, considering that pathological datasets are usually small, a location-aware and partially truncated loss function is proposed to improve the classification accuracy of datasets with few images and widely varying targets. We compare the performance of both object detection and instance segmentation with state-of-the-art methods. Experimental results demonstrate the effectiveness and efficiency of the proposed network on two datasets collected from multiple organs.

Improving Gravitational Wave Detection with 2D Convolutional Neural Networks

Siyu Fan, Yisen Wang, Yuan Luo, Alexander Michael Schmitt, Shenghua Yu

Auto-TLDR; Two-dimensional Convolutional Neural Networks for Gravitational Wave Detection from Time Series with Background Noise

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Sensitive gravitational wave (GW) detectors such as that of Laser Interferometer Gravitational-wave Observatory (LIGO) realize the direct observation of GW signals that confirm Einstein's general theory of relativity. However, it remains challenges to quickly detect faint GW signals from a large number of time series with background noise under unknown probability distributions. Traditional methods such as matched-filtering in general assume Additive White Gaussian Noise (AWGN) and are far from being real-time due to its high computational complexity. To avoid these weaknesses, one-dimensional (1D) Convolutional Neural Networks (CNNs) are introduced to achieve fast online detection in milliseconds but do not have enough consideration on the trade-off between the frequency and time features, which will be revisited in this paper through data pre-processing and subsequent two-dimensional (2D) CNNs during offline training to improve the online detection sensitivity. In this work, the input data is pre-processed to form a 2D spectrum by Short-time Fourier transform (STFT), where frequency features are extracted without learning. Then, carrying out two 1D convolutions across time and frequency axes respectively, and concatenating the time-amplitude and frequency-amplitude feature maps with equal proportion subsequently, the frequency and time features are treated equally as the input of our following two-dimensional CNNs. The simulation of our above ideas works on a generated data set with uniformly varying SNR (2-17), which combines the GW signal generated by PYCBC and the background noise sampled directly from LIGO. Satisfying the real-time online detection requirement without noise distribution assumption, the experiments of this paper demonstrate better performance in average compared to that of 1D CNNs, especially in the cases of lower SNR (4-9).

End-To-End Multi-Task Learning for Lung Nodule Segmentation and Diagnosis

Wei Chen, Qiuli Wang, Dan Yang, Xiaohong Zhang, Chen Liu, Yucong Li

Auto-TLDR; A novel multi-task framework for lung nodule diagnosis based on deep learning and medical features

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Computer-Aided Diagnosis (CAD) systems for lung nodule diagnosis based on deep learning have attracted much attention in recent years. However, most existing methods ignore the relationships between the segmentation and classification tasks, which leads to unstable performances. To address this problem, we propose a novel multi-task framework, which can provide lung nodule segmentation mask, malignancy prediction, and medical features for interpretable diagnosis at the same time. Our framework mainly contains two sub-network: (1) Multi-Channel Segmentation Sub-network (MSN) for lung nodule segmentation, and (2) Joint Classification Sub-network (JCN) for interpretable lung nodule diagnosis. In the proposed framework, we use U-Net down-sampling processes for extracting low-level deep learning features, which are shared by two sub-networks. The JCN forces the down-sampling processes to learn better lowlevel deep features, which lead to a better construct of segmentation masks. Meanwhile, two additional channels constructed by OTSU and super-pixel (SLIC) methods, are utilized as the guideline of the feature extraction. The proposed framework takes advantages of deep learning methods and classical methods, which can significantly improve the performances of all tasks. We evaluate the proposed framework on public dataset LIDCIDRI. Our framework achieves a promising Dice score of 86.43% in segmentation, 87.07% in malignancy level prediction, and convincing results in interpretable medical feature predictions.

Classify Breast Histopathology Images with Ductal Instance-Oriented Pipeline

Beibin Li, Ezgi Mercan, Sachin Mehta, Stevan Knezevich, Corey Arnold, Donald Weaver, Joann Elmore, Linda Shapiro

Auto-TLDR; DIOP: Ductal Instance-Oriented Pipeline for Diagnostic Classification

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In this study, we propose the Ductal Instance-Oriented Pipeline (DIOP) that contains a duct-level instance segmentation model, a tissue-level semantic segmentation model, and three-levels of features for diagnostic classification. Based on recent advancements in instance segmentation and the Mask R-CNN model, our duct-level segmenter tries to identify each ductal individual inside a microscopic image; then, it extracts tissue-level information from the identified ductal instances. Leveraging three levels of information obtained from these ductal instances and also the histopathology image, the proposed DIOP outperforms previous approaches (both feature-based and CNN-based) in all diagnostic tasks; for the four-way classification task, the DIOP achieves comparable performance to general pathologists in this unique dataset. The proposed DIOP only takes a few seconds to run in the inference time, which could be used interactively on most modern computers. More clinical explorations are needed to study the robustness and generalizability of this system in the future.

Comparison of Deep Learning and Hand Crafted Features for Mining Simulation Data

Theodoros Georgiou, Sebastian Schmitt, Thomas Baeck, Nan Pu, Wei Chen, Michael Lew

Auto-TLDR; Automated Data Analysis of Flow Fields in Computational Fluid Dynamics Simulations

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Computational Fluid Dynamics (CFD) simulations are a very important tool for many industrial applications, such as aerodynamic optimization of engineering designs like cars shapes, airplanes parts etc. The output of such simulations, in particular the calculated flow fields, are usually very complex and hard to interpret for realistic three-dimensional real-world applications, especially if time-dependent simulations are investigated. Automated data analysis methods are warranted but a non-trivial obstacle is given by the very large dimensionality of the data. A flow field typically consists of six measurement values for each point of the computational grid in 3D space and time (velocity vector values, turbulent kinetic energy, pressure and viscosity). In this paper we address the task of extracting meaningful results in an automated manner from such high dimensional data sets. We propose deep learning methods which are capable of processing such data and which can be trained to solve relevant tasks on simulation data, i.e. predicting drag and lift forces applied on an airfoil. We also propose an adaptation of the classical hand crafted features known from computer vision to address the same problem and compare a large variety of descriptors and detectors. Finally, we compile a large dataset of 2D simulations of the flow field around airfoils which contains 16000 flow fields with which we tested and compared approaches. Our results show that the deep learning-based methods, as well as hand crafted feature based approaches, are well-capable to accurately describe the content of the CFD simulation output on the proposed dataset.

Enhancing Semantic Segmentation of Aerial Images with Inhibitory Neurons

Ihsan Ullah, Sean Reilly, Michael Madden

Auto-TLDR; Lateral Inhibition in Deep Neural Networks for Object Recognition and Semantic Segmentation

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In a Convolutional Neural Network, each neuron in the output feature map takes input from the neurons in its receptive field. This receptive field concept plays a vital role in today's deep neural networks. However, inspired by neuro-biological research, it has been proposed to add inhibitory neurons outside the receptive field, which may enhance the performance of neural network models. In this paper, we begin with deep network architectures such as VGG and ResNet, and propose an approach to add lateral inhibition in each output neuron to reduce its impact on its neighbours, both in fine-tuning pre-trained models and training from scratch. Our experiments show that notable improvements upon prior baseline deep models can be achieved. A key feature of our approach is that it is easy to add to baseline models; it can be adopted in any model containing convolution layers, and we demonstrate its value in applications including object recognition and semantic segmentation of aerial images, where we show state-of-the-art result on the Aeroscape dataset. On semantic segmentation tasks, our enhancement shows 17.43% higher mIoU than a single baseline model on a single source (the Aeroscape dataset), 13.43% higher performance than an ensemble model on the same single source, and 7.03% higher than an ensemble model on multiple sources (segmentation datasets). Our experiments illustrate the potential impact of using inhibitory neurons in deep learning models, and they also show better results than the baseline models that have standard convolutional layer.

A Deep Learning Approach for the Segmentation of Myocardial Diseases

Khawala Brahim, Abdull Qayyum, Alain Lalande, Arnaud Boucher, Anis Sakly, Fabrice Meriaudeau

Auto-TLDR; Segmentation of Myocardium Infarction Using Late GADEMRI and SegU-Net

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Cardiac left ventricular (LV) segmentation is of paramount essential step for both diagnosis and treatment of cardiac pathologies such as ischemia, myocardial infarction, arrhythmia and myocarditis. However, this segmentation is challenging due to high variability across patients and the potential lack of contrast between structures. In this work, we propose and evaluate a (2.5D) SegU-Net model based on the fusion of two deep learning techniques (U-Net and Seg-Net) for automated LGEMRI (Late gadolinium enhanced magnetic resonance imaging) myocardial disease (infarct core and no reflow region) quantification in a new multifield expert annotated dataset. Given that the scar tissue represents a small part of the whole MRI slices, we focused on myocardium area. Segmentation results show that this preprocessing step facilitate the learning procedure. In order to solve the class imbalance problem, we propose to apply the Jaccard loss and the Focal Loss as optimization loss function and to integrate a class weights strategy into the objective function. Late combination has been used to merge the output of the best trained models on a different set of hyperparameters. The final network segmentation performances will be useful for future comparison of new method to the current related work for this task. A total number of 2237 of slices (320 cases) were used for training/validation and 210 slices (35 cases) were used for testing. Experiments over our proposed dataset, using several evaluation metrics such Jaccard distance (IOU), Accuracy and Dice similarity coefficient (DSC), demonstrate efficiency performance in quantifying different zones of myocardium infarction across various patients. As compared to the second intra-observer study, our testing results showed that the SegUNet prediction model leads to these average dice coefficients over all segmented tissue classes, respectively : 'Background': 0.99999, 'Myocardium': 0.99434, 'Infarctus': 0.95587, 'Noreflow': 0.78187.

Automatic Tuberculosis Detection Using Chest X-Ray Analysis with Position Enhanced Structural Information

Hermann Jepdjio Nkouanga, Szilard Vajda

Auto-TLDR; Automatic Chest X-ray Screening for Tuberculosis in Rural Population using Localized Region on Interest

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For Tuberculosis (TB) detection beside the more expensive diagnosis solutions such as culture or sputum smear analysis one could consider the automatic analysis of the chest X-ray (CXR). This could mimic the lung region reading by the radiologist and it could provide a cheap solution to analyze and diagnose pulmonary abnormalities such as TB which often co- occurs with HIV. This software based pulmonary screening can be a reliable and affordable solution for rural population in different parts of the world such as India, Africa, etc. Our fully automatic system is processing the incoming CXR image by applying image processing techniques to detect the region on interest (ROI) followed by a computationally cheap feature extraction involving edge detection using Laplacian of Gaussian which we enrich by counting the local distribution of the intensities. The choice to ”zoom in” the ROI and look for abnormalities locally is motivated by the fact that some pulmonary abnormalities are localized in specific regions of the lungs. Later on the classifiers can decide about the normal or abnormal nature of each lung X-ray. Our goal is to find a simple feature, instead of a combination of several ones, -proposed and promoted in recent years’ literature, which can properly describe the different pathological alterations in the lungs. Our experiments report results on two publicly available data collections1, namely the Shenzhen and the Montgomery collection. For performance evaluation, measures such as area under the curve (AUC), and accuracy (ACC) were considered, achieving AUC = 0.81 (ACC = 83.33%) and AUC = 0.96 (ACC = 96.35%) for the Montgomery and Schenzen collections, respectively. Several comparisons are also provided to other state- of-the-art systems reported recently in the field.

Atmospheric Blocking Pattern Recognition in Global Climate Model Simulation Data

Grzegorz Muszynski, Prabhat Mr, Jan Balewski, Karthik Kashinath, Michael Wehner, Vitaliy Kurlin

Auto-TLDR; A Hierarchical Pattern Recognition of Atmospheric Blocking Events in Global Climate Model Simulation Data

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In this paper, we address a problem of atmospheric blocking pattern recognition in global climate model simulation data. Understanding blocking events is a crucial problem to society and natural infrastructure, as they often lead to weather extremes, such as heat waves, heavy precipitation, and the unusually poor air condition. Moreover, it is very challenging to detect these events as there is no physics-based model of blocking dynamic development that could account for their spatiotemporal characteristics. Here, we propose a new two- stage hierarchical pattern recognition method for detection and localization of atmospheric blocking events in different regions over the globe. For both the detection stage and localisation stage, we train five different architectures of a CNN-based classifier and regressor. The results show the general pattern of the atmospheric blocking detection performance increasing significantly for the deep CNN architectures. In contrast, we see the estimation error of event location decreasing significantly in the localisation problem for the shallow CNN architectures. We demonstrate that CNN architectures tend to achieve the highest accuracy for blocking event detection and the lowest estimation error of event localization in regions of the Northern Hemisphere than in regions of the Southern Hemisphere.

Trainable Spectrally Initializable Matrix Transformations in Convolutional Neural Networks

Michele Alberti, Angela Botros, Schuetz Narayan, Rolf Ingold, Marcus Liwicki, Mathias Seuret

Auto-TLDR; Trainable and Spectrally Initializable Matrix Transformations for Neural Networks

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In this work, we introduce a new architectural component to Neural Networks (NN), i.e., trainable and spectrally initializable matrix transformations on feature maps. While previous literature has already demonstrated the possibility of adding static spectral transformations as feature processors, our focus is on more general trainable transforms. We study the transforms in various architectural configurations on four datasets of different nature: from medical (ColorectalHist, HAM10000) and natural (Flowers) images to historical documents (CB55). With rigorous experiments that control for the number of parameters and randomness, we show that networks utilizing the introduced matrix transformations outperform vanilla neural networks. The observed accuracy increases appreciably across all datasets. In addition, we show that the benefit of spectral initialization leads to significantly faster convergence, as opposed to randomly initialized matrix transformations. The transformations are implemented as auto-differentiable PyTorch modules that can be incorporated into any neural network architecture. The entire code base is open-source.

Inception Based Deep Learning Architecture for Tuberculosis Screening of Chest X-Rays

Dipayan Das, K.C. Santosh, Umapada Pal

Auto-TLDR; End to End CNN-based Chest X-ray Screening for Tuberculosis positive patients in the severely resource constrained regions of the world

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The motivation for this work is the primary need of screening Tuberculosis (TB) positive patients in the severely resource constrained regions of the world. Chest X-ray (CXR) is considered to be a promising indicator for the onset of TB, but the lack of skilled radiologists in such regions degrades the situation. Therefore, several computer aided diagnosis (CAD) systems have been proposed to solve the decision making problem, which includes hand engineered feature extraction methods to deep learning or Convolutional Neural Network (CNN) based methods. Feature extraction, being a time and resource intensive process, often delays the process of mass screening. Hence an end to end CNN architecture is proposed in this work to solve the problem. Two benchmark CXR datasets have been used in this work, collected from Shenzhen (China) and Montgomery County (USA), on which the proposed methodology achieved a maximum abnormality detection accuracy (ACC) of 91.7\% (0.96 AUC) and 87.47\% (0.92 AUC) respectively. To the greatest of our knowledge, the obtained results are marginally superior to the state of the art results that have solely used deep learning methodologies on the aforementioned datasets.

Semantic Segmentation of Breast Ultrasound Image with Pyramid Fuzzy Uncertainty Reduction and Direction Connectedness Feature

Kuan Huang, Yingtao Zhang, Heng-Da Cheng, Ping Xing, Boyu Zhang

Auto-TLDR; Uncertainty-Based Deep Learning for Breast Ultrasound Image Segmentation

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Deep learning approaches have achieved impressive results in breast ultrasound (BUS) image segmentation. However, these methods did not solve uncertainty and noise in BUS images well. To address this issue, we present a novel deep learning structure for BUS image semantic segmentation by analyzing the uncertainty using a pyramid fuzzy block and generating a novel feature based on connectedness. Firstly, feature maps in the proposed network are down-sampled to different resolutions. Fuzzy transformation and uncertainty representation are applied to each resolution to obtain the uncertainty degree on different scales. Meanwhile, the BUS images contain layer structures. From top to bottom, there are skin layer, fat layer, mammary layer, muscle layer, and background area. A spatial recurrent neural network (RNN) is utilized to calculate the connectedness between each pixel and the pixels on the four boundaries in horizontal and vertical lines. The spatial-wise context feature can introduce the characteristic of layer structure to deep neural network. Finally, the original convolutional features are combined with connectedness feature according to the uncertainty degrees. The proposed methods are applied to two datasets: a BUS image benchmark with two categories (background and tumor) and a five-category BUS image dataset with fat layer, mammary layer, muscle layer, background, and tumor. The proposed method achieves the best results on both datasets compared with eight state-of-the-art deep learning-based approaches.

EasiECG: A Novel Inter-Patient Arrhythmia Classification Method Using ECG Waves

Chuanqi Han, Ruoran Huang, Fang Yu, Xi Huang, Li Cui

Auto-TLDR; EasiECG: Attention-based Convolution Factorization Machines for Arrhythmia Classification

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Abstract—In an ECG record, the PQRST waves are of important medical significance which provide ample information reflecting heartbeat activities. In this paper, we propose a novel arrhythmia classification method namely EasiECG, characterized by simplicity and accuracy. Compared with other works, the EasiECG takes the configuration of these five key waves into account and does not require complicated feature engineering. Meanwhile, an additional encoding of the extracted features makes the EasiECG applicable even on samples with missing waves. To automatically capture interactions that contribute to the classification among the processed features, a novel adapted classification model named Attention-based Convolution Factorization Machines (ACFM) is proposed. In detail, the ACFM can learn both linear and high-order interactions from linear regression and convolution on outer-product feature interaction maps, respectively. After that, an attention mechanism implemented in the model can further assign different importance of these interactions when predicting certain types of heartbeats. To validate the effectiveness and practicability of our EasiECG, extensive experiments of inter-patient paradigm on the benchmark MIT-BIH arrhythmia database are conducted. To tackle the imbalanced sample problem in this dataset, an ingenious loss function: focal loss is adopted when training. The experiment results show that our method is competitive compared with other state-of-the-arts, especially in classifying the Supraventricular ectopic beats. Besides, the EasiECG achieves an overall accuracy of 87.6% on samples with a missing wave in the related experiment, demonstrating the robustness of our proposed method.

Classification of Intestinal Gland Cell-Graphs Using Graph Neural Networks

Linda Studer, Jannis Wallau, Heather Dawson, Inti Zlobec, Andreas Fischer

Auto-TLDR; Graph Neural Networks for Classification of Dysplastic Gland Glands using Graph Neural Networks

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We propose to classify intestinal glands as normal or dysplastic using cell-graphs and graph-based deep learning methods. Dysplastic intestinal glands can lead to colorectal cancer, which is one of the three most common cancer types in the world. In order to assess the cancer stage and thus the treatment of a patient, pathologists analyse tissue samples of affected patients. Among other factors, they look at the changes in morphology of different tissues, such as the intestinal glands. Cell-graphs have a high representational power and can describe topological and geometrical properties of intestinal glands. However, classical graph-based methods have a high computational complexity and there is only a limited range of machine learning methods available. In this paper, we propose Graph Neural Networks (GNNs) as an efficient learning-based approach to classify cell-graphs. We investigate different variants of so-called Message Passing Neural Networks and compare them with a classical graph-based approach based on approximated Graph Edit Distance and k-nearest neighbours classifier. A promising classification accuracy of 94.1% is achieved by the proposed method on the pT1 Gland Graph dataset, which is an increase of 11.5% over the baseline result.

Generalized Iris Presentation Attack Detection Algorithm under Cross-Database Settings

Mehak Gupta, Vishal Singh, Akshay Agarwal, Mayank Vatsa, Richa Singh

Auto-TLDR; MVNet: A Deep Learning-based PAD Network for Iris Recognition against Presentation Attacks

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The deployment of biometrics features based person identification has increased significantly from border access to mobile unlock to electronic transactions. Iris recognition is considered as one of the most accurate biometric modality for person identification. However, the vulnerability of this recognition towards presentation attacks, especially towards the 3D contact lenses, can limit its potential deployments. The textured lenses are so effective in hiding the real texture of iris that it can fool not only the automatic recognition algorithms but also the human examiners. While in literature, several presentation attack detection (PAD) algorithms are presented; however, the significant limitation is the generalizability against an unseen database, unseen sensor, and different imaging environment. Inspired by the success of the hybrid algorithm or fusion of multiple detection networks, we have proposed a deep learning-based PAD network that utilizes multiple feature representation layers. The computational complexity is an essential factor in training the deep neural networks; therefore, to limit the computational complexity while learning multiple feature representation layers, a base model is kept the same. The network is trained end-to-end using a softmax classifier. We have evaluated the performance of the proposed network termed as MVNet using multiple databases such as IIITD-WVU MUIPA, IIITD-WVU UnMIPA database under cross-database training-testing settings. The experiments are performed extensively to assess the generalizability of the proposed algorithm.

Early Wildfire Smoke Detection in Videos

Taanya Gupta, Hengyue Liu, Bir Bhanu

Auto-TLDR; Semi-supervised Spatio-Temporal Video Object Segmentation for Automatic Detection of Smoke in Videos during Forest Fire

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Recent advances in unmanned aerial vehicles and camera technology have proven useful for the detection of smoke that emerges above the trees during a forest fire. Automatic detection of smoke in videos is of great interest to Fire department. To date, in most parts of the world, the fire is not detected in its early stage and generally it turns catastrophic. This paper introduces a novel technique that integrates spatial and temporal features in a deep learning framework using semi-supervised spatio-temporal video object segmentation and dense optical flow. However, detecting this smoke in the presence of haze and without the labeled data is difficult. Considering the visibility of haze in the sky, a dark channel pre-processing method is used that reduces the amount of haze in video frames and consequently improves the detection results. Online training is performed on a video at the time of testing that reduces the need for ground-truth data. Tests using the publicly available video datasets show that the proposed algorithms outperform previous work and they are robust across different wildfire-threatened locations.

Hybrid Network for End-To-End Text-Independent Speaker Identification

Wajdi Ghezaiel, Luc Brun, Olivier Lezoray

Auto-TLDR; Text-Independent Speaker Identification with Scattering Wavelet Network and Convolutional Neural Networks

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Deep learning has recently improved the performance of Speaker Identification (SI) systems. Promising results have been obtained with Convolutional Neural Networks (CNNs). This success are mostly driven by the advent of large datasets. However in the context of commercial applications, collection of large amount of training data is not always possible. In addition, robustness of a SI system is adversely effected by short utterances. SI with only a few and short utterances is a challenging problem. Therefore, in this paper, we propose a novel text-independent speaker identification system. The proposed system can identify speakers by learning from only few training short utterances examples. To achieve this, we combine CNN with Scattering Wavelet Network. We propose a two-stage feature extraction framework using a two-layer wavelet scattering network coupled with a CNN for SI system. The proposed architecture takes variable length speech segments. To evaluate the effectiveness of the proposed approach, Timit and Librispeech datasets are used in the experiments. These conducted experiments show that our hybrid architecture performs successfully for SI, even with a small number and short duration of training samples. In comparaison with related methods, the obtained results shows that an hybrid architecture achieve better performance.

CAggNet: Crossing Aggregation Network for Medical Image Segmentation

Xu Cao, Yanghao Lin

Auto-TLDR; Crossing Aggregation Network for Medical Image Segmentation

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In this paper, we present Crossing Aggregation Network (CAggNet), a novel densely connected semantic segmentation method for medical image analysis. The crossing aggregation network absorbs the idea of deep layer aggregation and makes significant innovations in layer connection and semantic information fusion. In this architecture, the traditional skip-connection structure of general U-Net is replaced by aggregations of multi-level down-sampling and up-sampling layers. This enables the network to fuse information interactively flows at different levels of layers in semantic segmentation. It also introduces weighted aggregation module to aggregate multi-scale output information. We have evaluated and compared our CAggNet with several advanced U-Net based methods in two public medical image datasets, including the 2018 Data Science Bowl nuclei detection dataset and the 2015 MICCAI gland segmentation competition dataset. Experimental results indicate that CAggNet improves medical object recognition and achieves a more accurate and efficient segmentation compared to existing improved U-Net and UNet++ structure.

Efficient-Receptive Field Block with Group Spatial Attention Mechanism for Object Detection

Jiacheng Zhang, Zhicheng Zhao, Fei Su

Auto-TLDR; E-RFB: Efficient-Receptive Field Block for Deep Neural Network for Object Detection

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Object detection has been paid rising attention in computer vision field. Convolutional Neural Networks (CNNs) extract high-level semantic features of images, which directly determine the performance of object detection. As a common solution, embedding integration modules into CNNs can enrich extracted features and thereby improve the performance. However, the instability and inconsistency of internal multiple branches exist in these modules. To address this problem, we propose a novel multibranch module called Efficient-Receptive Field Block (E-RFB), in which multiple levels of features are combined for network optimization. Specifically, by downsampling and increasing depth, the E-RFB provides sufficient RF. Second, in order to eliminate the inconsistency across different branches, a novel spatial attention mechanism, namely, Group Spatial Attention Module (GSAM) is proposed. The GSAM gradually narrows a feature map by channel grouping; thus it encodes the information between spatial and channel dimensions into the final attention heat map. Third, the proposed module can be easily joined in various CNNs to enhance feature representation as a plug-and-play component. With SSD-style detectors, our method halves the parameters of the original detection head and achieves high accuracy on the PASCAL VOC and MS COCO datasets. Moreover, the proposed method achieves superior performance compared with state-of-the-art methods based on similar framework.

Do Not Treat Boundaries and Regions Differently: An Example on Heart Left Atrial Segmentation

Zhou Zhao, Elodie Puybareau, Nicolas Boutry, Thierry Geraud

Auto-TLDR; Attention Full Convolutional Network for Atrial Segmentation using ResNet-101 Architecture

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Atrial fibrillation is the most common heart rhythm disease. Due to a lack of understanding in matter of underlying atrial structures, current treatments are still not satisfying. Recently, with the popularity of deep learning, many segmentation methods based on fully convolutional networks have been proposed to analyze atrial structures, especially from late gadolinium-enhanced magnetic resonance imaging. However, two problems still occur: 1) segmentation results include the atrial-like background; 2) boundaries are very hard to segment. Most segmentation approaches design a specific network that mainly focuses on the regions, to the detriment of the boundaries. Therefore, this paper proposes an attention full convolutional network framework based on the ResNet-101 architecture, which focuses on boundaries as much as on regions. The additional attention module is added to have the network pay more attention on regions and then to reduce the impact of the misleading similarity of neighboring tissues. We also use a hybrid loss composed of a region loss and a boundary loss to treat boundaries and regions at the same time. We demonstrate the efficiency of the proposed approach on the MICCAI 2018 Atrial Segmentation Challenge public dataset.

Ultrasound Image Restoration Using Weighted Nuclear Norm Minimization

Hanmei Yang, Ye Luo, Jianwei Lu, Jian Lu

Auto-TLDR; A Nonconvex Low-Rank Matrix Approximation Model for Ultrasound Images Restoration

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Ultrasound images are often contaminated by speckle noise during the acquisition process, which influences the performance of subsequent application. The paper introduces a nonconvex low-rank matrix approximation model for ultrasound images restoration, which integrates the weighted unclear norm minimization (WNNM) and data fidelity term. WNNM can adaptively assign weights on differnt singular values to preserve more details in restored images. The fidelity term about ultrasound images do not be utilized in existing low-rank ultrasound denoising methods. This optimization question can effectively solved by alternating direction method of multipliers (ADMM). The experimental results on simulated images and real medical ultrasound images demonstrate the excellent performance of the proposed method compared with other four state-of-the-art methods.

Force Banner for the Recognition of Spatial Relations

Robin Deléarde, Camille Kurtz, Laurent Wendling, Philippe Dejean

Auto-TLDR; Spatial Relation Recognition using Force Banners

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Studying the spatial organization of objects in images is fundamental to increase both the understanding of the sensed scene and the accuracy of the perceived similarity between images. This often leads to the problem of spatial relation recognition: given two objects depicted in an image, what is their spatial relation? In this article, we consider this as a classification problem. Instead of considering directly the original image space (or imaging features) to predict the spatial relation, we propose a novel intermediate representation (called Force Banner) modeling rich spatial information between pairs of objects composing a scene. Such a representation captures the relative position between objects using a panel of forces (attraction and repulsion), that take into account the structural shapes of the objects and their distance in a directional fashion. Force Banners are used to feed a classical 2D Convolutional Neural Network (CNN) for the recognition of spatial relations, benefiting from pre-trained models and fine-tuning. Experimental results obtained on a dataset of images with various shapes highlight the interest of this approach, and in particular its benefit to describe spatial information.

Attention Based Multi-Instance Thyroid Cytopathological Diagnosis with Multi-Scale Feature Fusion

Shuhao Qiu, Yao Guo, Chuang Zhu, Wenli Zhou, Huang Chen

Auto-TLDR; A weakly supervised multi-instance learning framework based on attention mechanism with multi-scale feature fusion for thyroid cytopathological diagnosis

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In recent years, deep learning has been popular in combining with cytopathology diagnosis. Using the whole slide images (WSI) scanned by electronic scanners at clinics, researchers have developed many algorithms to classify the slide (benign or malignant). However, the key area that support the diagnosis result can be relatively small in a thyroid WSI, and only the global label can be acquired, which make the direct use of the strongly supervised learning framework infeasible. What’s more, because the clinical diagnosis of the thyroid cells requires the use of visual features in different scales, a generic feature extraction way may not achieve good performance. In this paper, we propose a weakly supervised multi-instance learning framework based on attention mechanism with multi-scale feature fusion (MSF) using convolutional neural network (CNN) for thyroid cytopathological diagnosis. We take each WSI as a bag, each bag contains multiple instances which are the different regions of the WSI, our framework is trained to learn the key area automatically and make the classification. We also propose a feature fusion structure, merge the low-level features into the final feature map and add an instance-level attention module in it, which improves the classification accuracy. Our model is trained and tested on the collected clinical data, reaches the accuracy of 93.2%, which outperforms the other existing methods. We also tested our model on a public histopathology dataset and achieves better result than the state-of-the-art deep multi-instance method.

Construction Worker Hardhat-Wearing Detection Based on an Improved BiFPN

Chenyang Zhang, Zhiqiang Tian, Jingyi Song, Yaoyue Zheng, Bo Xu

Auto-TLDR; A One-Stage Object Detection Method for Hardhat-Wearing in Construction Site

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Work in the construction site is considered to be one of the occupations with the highest safety risk factor. Therefore, safety plays an important role in construction site. One of the most fundamental safety rules in construction site is to wear a hardhat. To strengthen the safety of the construction site, most of the current methods use multi-stage method for hardhat-wearing detection. These methods have limitations in terms of adaptability and generalizability. In this paper, we propose a one-stage object detection method based on convolutional neural network. We present a multi-scale strategy that selects the high-resolution feature maps of DarkNet-53 to effectively identify small-scale hardhats. In addition, we propose an improved weighted bi-directional feature pyramid network (BiFPN), which could fuse more semantic features from more scales. The proposed method can not only detect hardhat-wearing, but also identify the color of the hardhat. Experimental results show that the proposed method achieves a mAP of 87.04%, which outperforms several state-of-the-art methods on a public dataset.

BiLuNet: A Multi-Path Network for Semantic Segmentation on X-Ray Images

Van Luan Tran, Huei-Yung Lin, Rachel Liu, Chun-Han Tseng, Chun-Han Tseng

Auto-TLDR; BiLuNet: Multi-path Convolutional Neural Network for Semantic Segmentation of Lumbar vertebrae, sacrum,

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Semantic segmentation and shape detection of lumbar vertebrae, sacrum, and femoral heads from clinical X-ray images are important and challenging tasks. In this paper, we propose a new multi-path convolutional neural network, BiLuNet, for semantic segmentation on X-ray images. The network is capable of medical image segmentation with very limited training data. With the shape fitting of the bones, we can identify the location of the target regions very accurately for lumbar vertebra inspection. We collected our dataset and annotated by doctors for model training and performance evaluation. Compared to the state-of-the-art methods, the proposed technique provides better mIoUs and higher success rates with the same training data. The experimental results have demonstrated the feasibility of our network to perform semantic segmentation for lumbar vertebrae, sacrum, and femoral heads.