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A Heuristic-Based Decision Tree for Connected Components Labeling of 3D Volumes

Maximilian Söchting, Stefano Allegretti, Federico Bolelli, Costantino Grana

Auto-TLDR; Entropy Partitioning Decision Tree for Connected Components Labeling

Abstract Slides Poster

Connected Components Labeling represents a fundamental step for many Computer Vision and Image Processing pipelines. Since the first appearance of the task in the sixties, many algorithmic solutions to optimize the computational load needed to label an image have been proposed. Among them, block-based scan approaches and decision trees revealed to be some of the most valuable strategies. However, due to the cost of the manual construction of optimal decision trees and the computational limitations of automatic strategies employed in the past, the application of blocks and decision trees has been restricted to small masks, and thus to 2D algorithms. With this paper we present a novel heuristic algorithm based on decision tree learning methodology, called Entropy Partitioning Decision Tree (EPDT). It allows to compute near-optimal decision trees for large scan masks. Experimental results demonstrate that algorithms based on the generated decision trees outperform state-of-the-art competitors.

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On Morphological Hierarchies for Image Sequences

Caglayan Tuna, Alain Giros, François Merciol, Sébastien Lefèvre

Auto-TLDR; Comparison of Hierarchies for Image Sequences

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Morphological hierarchies form a popular framework aiming at emphasizing the multiscale structure of digital image by performing an unsupervised spatial partitioning of the data. These hierarchies have been recently extended to cope with image sequences, and different strategies have been proposed to allow their construction from spatio-temporal data. In this paper, we compare these hierarchical representation strategies for image sequences according to their structural properties. We introduce a projection method to make these representations comparable. Furthermore, we extend one of these recent strategies in order to obtain more efficient hierarchical representations for image sequences. Experiments were conducted on both synthetic and real datasets, the latter being made of satellite image time series. We show that building one hierarchy by using spatial and temporal information together is more efficient comparing to other existing strategies.

Robust Skeletonization for Plant Root Structure Reconstruction from MRI

Jannis Horn

Auto-TLDR; Structural reconstruction of plant roots from MRI using semantic root vs shoot segmentation and 3D skeletonization

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Structural reconstruction of plant roots from MRI is challenging, because of low resolution and low signal-to-noise ratio of the 3D measurements which may lead to disconnectivities and wrongly connected roots. We propose a two-stage approach for this task. The first stage is based on semantic root vs. soil segmentation and finds lowest-cost paths from any root voxel to the shoot. The second stage takes the largest fully connected component generated in the first stage and uses 3D skeletonization to extract a graph structure. We evaluate our method on 22 MRI scans and compare to human expert reconstructions.

The DeepHealth Toolkit: A Unified Framework to Boost Biomedical Applications

Michele Cancilla, Laura Canalini, Federico Bolelli, Stefano Allegretti, Salvador Carrión, Roberto Paredes, Jon Ander Gómez, Simone Leo, Marco Enrico Piras, Luca Pireddu, Asaf Badouh, Santiago Marco-Sola, Lluc Alvarez, Miquel Moreto, Costantino Grana

Auto-TLDR; DeepHealth Toolkit: An Open Source Deep Learning Toolkit for Cloud Computing and HPC

Abstract Slides Poster Similar

Given the overwhelming impact of machine learning on the last decade, several libraries and frameworks have been developed in recent years to simplify the design and training of neural networks, providing array-based programming, automatic differentiation and user-friendly access to hardware accelerators. None of those tools, however, was designed with native and transparent support for Cloud Computing or heterogeneous High-Performance Computing (HPC). The DeepHealth Toolkit is an open source deep learning toolkit aimed at boosting productivity of data scientists operating in the medical field by providing a unified framework for the distributed training of neural networks, that is able to leverage hybrid HPC and Cloud environments in a way transparent to the user. The toolkit is composed of a computer vision library, a deep learning library, and a front-end for non-expert users; all of the components are focused on the medical domain, but they are general purpose and can be applied to any other field. In this paper, the principles driving the design of the DeepHealth libraries are described, along with details about the implementation and the interaction between the different elements composing the toolkit. Finally, experiments on common benchmarks prove the efficiency of each separate component, and of the DeepHealth Toolkit overall.

Decision Snippet Features

Pascal Welke, Fouad Alkhoury, Christian Bauckhage, Stefan Wrobel

Auto-TLDR; Decision Snippet Features for Interpretability

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Decision trees excel at interpretability of their prediction results. To achieve required prediction accuracies, however, often large ensembles of decision trees -- random forests -- are considered, reducing interpretability due to large size. Additionally, their size slows down inference on modern hardware and restricts their applicability in low-memory embedded devices. We introduce \emph{Decision Snippet Features}, which are obtained from small subtrees that appear frequently in trained random forests. We subsequently show that linear models on top of these features achieve comparable and sometimes even better predictive performance than the original random forest, while reducing the model size by up to two orders of magnitude.

Planar 3D Transfer Learning for End to End Unimodal MRI Unbalanced Data Segmentation

Martin Kolarik, Radim Burget, Carlos M. Travieso-Gonzalez, Jan Kocica

Auto-TLDR; Planar 3D Res-U-Net Network for Unbalanced 3D Image Segmentation using Fluid Attenuation Inversion Recover

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We present a novel approach of 2D to 3D transfer learning based on mapping pre-trained 2D convolutional neural network weights into planar 3D kernels. The method is validated by proposed planar 3D res-u-net network with encoder transferred from the 2D VGG-16 which is applied for a single-stage unbalanced 3D image data segmentation. In particular, we evaluate the method on the MICCAI 2016 MS lesion segmentation challenge dataset utilizing solely Fluid Attenuation Inversion Recover (FLAIR) sequence without brain extraction for training and inference to simulate real medical praxis. The planar 3D res-u-net network performed the best both in sensitivity and Dice score amongst end to end methods processing raw MRI scans and achieved comparable Dice score to a state-of-the-art unimodal not end to end approach. Complete source code was released under the open-source license and this paper is in compliance with the Machine learning Reproducibility Checklist. By implementing practical transfer learning for 3D data representation we were able to successfully segment heavily unbalanced data without selective sampling and achieved more reliable results using less training data in single modality. From medical perspective, the unimodal approach gives an advantage in real praxis as it does not require co-registration nor additional scanning time during examination. Although modern medical imaging methods capture high resolution 3D anatomy scans suitable for computer aided detection system processing, deployment of automatic systems for interpretation of radiology imaging is still rather theoretical in many medical areas. Our work aims to bridge the gap offering solution for partial research questions.

Automatic Semantic Segmentation of Structural Elements related to the Spinal Cord in the Lumbar Region by Using Convolutional Neural Networks

Jhon Jairo Sáenz Gamboa, Maria De La Iglesia-Vaya, Jon Ander Gómez

Auto-TLDR; Semantic Segmentation of Lumbar Spine Using Convolutional Neural Networks

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This work addresses the problem of automatically segmenting the MR images corresponding to the lumbar spine. The purpose is to detect and delimit the different structural elements like vertebrae, intervertebral discs, nerves, blood vessels, etc. This task is known as semantic segmentation. The approach proposed in this work is based on convolutional neural networks whose output is a mask where each pixel from the input image is classified into one of the possible classes. Classes were defined by radiologists and correspond to structural elements and tissues. The proposed network architectures are variants of the U-Net. Several complementary blocks were used to define the variants: spatial attention models, deep supervision and multi-kernels at input, this last block type is based on the idea of inception. Those architectures which got the best results are described in this paper, and their results are discussed. Two of the proposed architectures outperform the standard U-Net used as baseline.

Weakly Supervised Geodesic Segmentation of Egyptian Mummy CT Scans

Avik Hati, Matteo Bustreo, Diego Sona, Vittorio Murino, Alessio Del Bue

Auto-TLDR; A Weakly Supervised and Efficient Interactive Segmentation of Ancient Egyptian Mummies CT Scans Using Geodesic Distance Measure and GrabCut

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In this paper, we tackle the task of automatically analyzing 3D volumetric scans obtained from computed tomography (CT) devices. In particular, we address a particular task for which data is very limited: the segmentation of ancient Egyptian mummies CT scans. We aim at digitally unwrapping the mummy and identify different segments such as body, bandages and jewelry. The problem is complex because of the lack of annotated data for the different semantic regions to segment, thus discouraging the use of strongly supervised approaches. We, therefore, propose a weakly supervised and efficient interactive segmentation method to solve this challenging problem. After segmenting the wrapped mummy from its exterior region using histogram analysis and template matching, we first design a voxel distance measure to find an approximate solution for the body and bandage segments. Here, we use geodesic distances since voxel features as well as spatial relationship among voxels is incorporated in this measure. Next, we refine the solution using a GrabCut based segmentation together with a tracking method on the slices of the scan that assigns labels to different regions in the volume, using limited supervision in the form of scribbles drawn by the user. The efficiency of the proposed method is demonstrated using visualizations and validated through quantitative measures and qualitative unwrapping of the mummy.

One Step Clustering Based on A-Contrario Framework for Detection of Alterations in Historical Violins

Alireza Rezaei, Sylvie Le Hégarat-Mascle, Emanuel Aldea, Piercarlo Dondi, Marco Malagodi

Auto-TLDR; A-Contrario Clustering for the Detection of Altered Violins using UVIFL Images

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Preventive conservation is an important practice in Cultural Heritage. The constant monitoring of the state of conservation of an artwork helps us reduce the risk of damage and number of interventions necessary. In this work, we propose a probabilistic approach for the detection of alterations on the surface of historical violins based on an a-contrario framework. Our method is a one step NFA clustering solution which considers grey-level and spatial density information in one background model. The proposed method is robust to noise and avoids parameter tuning and any assumption about the quantity of the worn out areas. We have used as input UV induced fluorescence (UVIFL) images for considering details not perceivable with visible light. Tests were conducted on image sequences included in the ``Violins UVIFL imagery'' dataset. Results illustrate the ability of the algorithm to distinguish the worn area from the surrounding regions. Comparisons with the state of the art clustering methods shows improved overall precision and recall.

Trainable Spectrally Initializable Matrix Transformations in Convolutional Neural Networks

Michele Alberti, Angela Botros, Schuetz Narayan, Rolf Ingold, Marcus Liwicki, Mathias Seuret

Auto-TLDR; Trainable and Spectrally Initializable Matrix Transformations for Neural Networks

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In this work, we introduce a new architectural component to Neural Networks (NN), i.e., trainable and spectrally initializable matrix transformations on feature maps. While previous literature has already demonstrated the possibility of adding static spectral transformations as feature processors, our focus is on more general trainable transforms. We study the transforms in various architectural configurations on four datasets of different nature: from medical (ColorectalHist, HAM10000) and natural (Flowers) images to historical documents (CB55). With rigorous experiments that control for the number of parameters and randomness, we show that networks utilizing the introduced matrix transformations outperform vanilla neural networks. The observed accuracy increases appreciably across all datasets. In addition, we show that the benefit of spectral initialization leads to significantly faster convergence, as opposed to randomly initialized matrix transformations. The transformations are implemented as auto-differentiable PyTorch modules that can be incorporated into any neural network architecture. The entire code base is open-source.

Enhancing Deep Semantic Segmentation of RGB-D Data with Entangled Forests

Matteo Terreran, Elia Bonetto, Stefano Ghidoni

Auto-TLDR; FuseNet: A Lighter Deep Learning Model for Semantic Segmentation

Abstract Slides Poster Similar

Semantic segmentation is a problem which is getting more and more attention in the computer vision community. Nowadays, deep learning methods represent the state of the art to solve this problem, and the trend is to use deeper networks to get higher performance. The drawback with such models is a higher computational cost, which makes it difficult to integrate them on mobile robot platforms. In this work we want to explore how to obtain lighter deep learning models without compromising performance. To do so we will consider the features used in the Entangled Random Forest algorithm and we will study the best strategies to integrate these within FuseNet deep network. Such new features allow us to shrink the network size without loosing performance, obtaining hence a lighter model which achieves state-of-the-art performance on the semantic segmentation task and represents an interesting alternative for mobile robotics applications, where computational power and energy are limited.

On Learning Random Forests for Random Forest Clustering

Manuele Bicego, Francisco Escolano

Auto-TLDR; Learning Random Forests for Clustering

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In this paper we study the poorly investigated problem of learning Random Forests for distance-based Random Forest clustering. We studied both classic schemes as well as alternative approaches, novel in this context. In particular, we investigated the suitability of Gaussian Density Forests, Random Forests specifically designed for density estimation. Further, we introduce a novel variant of Random Forest, based on an effective non parametric by-pass estimator of the Renyi entropy, which can be useful when the parametric assumption is too strict. An empirical evaluation involving different datasets and different RF-clustering strategies confirms that the learning step is crucial for RF-clustering. We also present a set of practical guidelines useful to determine the most suitable variant of RF-clustering according to the problem under examination.

Confidence Calibration for Deep Renal Biopsy Immunofluorescence Image Classification

Federico Pollastri, Juan Maroñas, Federico Bolelli, Giulia Ligabue, Roberto Paredes, Riccardo Magistroni, Costantino Grana

Auto-TLDR; A Probabilistic Convolutional Neural Network for Immunofluorescence Classification in Renal Biopsy

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With this work we tackle immunofluorescence classification in renal biopsy, employing state-of-the-art Convolutional Neural Networks. In this setting, the aim of the probabilistic model is to assist an expert practitioner towards identifying the location pattern of antibody deposits within a glomerulus. Since modern neural networks often provide overconfident outputs, we stress the importance of having a reliable prediction, demonstrating that Temperature Scaling, a recently introduced re-calibration technique, can be successfully applied to immunofluorescence classification in renal biopsy. Experimental results demonstrate that the designed model yields good accuracy on the specific task, and that Temperature Scaling is able to provide reliable probabilities, which are highly valuable for such a task given the low inter-rater agreement.

An Evaluation of DNN Architectures for Page Segmentation of Historical Newspapers

Manuel Burghardt, Bernhard Liebl

Auto-TLDR; Evaluation of Backbone Architectures for Optical Character Segmentation of Historical Documents

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One important and particularly challenging step in the optical character recognition of historical documents with complex layouts, such as newspapers, is the separation of text from non-text content (e.g. page borders or illustrations). This step is commonly referred to as page segmentation. While various rule-based algorithms have been proposed, the applicability of Deep Neural Networks for this task recently has gained a lot of attention. In this paper, we perform a systematic evaluation of 11 different published backbone architectures and 9 different tiling and scaling configurations for separating text, tables or table column lines. We also show the influence of the number of labels and the number of training pages on the segmentation quality, which we measure using the Matthews Correlation Coefficient. Our results show that (depending on the task) Inception-ResNet-v2 and EfficientNet backbones work best, vertical tiling is generally preferable to other tiling approaches, and training data that comprises 30 to 40 pages will be sufficient most of the time.

Generation of Hypergraphs from the N-Best Parsing of 2D-Probabilistic Context-Free Grammars for Mathematical Expression Recognition

Noya Ernesto, Joan Andreu Sánchez, Jose Miguel Benedi

Auto-TLDR; Hypergraphs: A Compact Representation of the N-best parse trees from 2D-PCFGs

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We consider hypergraphs as a tool to compactly represent the result of the n-best parse trees, obtained by Bi-Dimensional Probabilistic Context-Free Grammars, for an input image that represents a mathematical expression. More specifically, in this paper we propose: an algorithm to compute the N-best parse trees from a 2D-PCFGs; an algorithm to represent the n-best parse trees using a compact representation in the form of hypergraphs; and a formal framework for the development of inference algorithms (inside and outside) and normalization strategies of hypergraphs.

Creating Classifier Ensembles through Meta-Heuristic Algorithms for Aerial Scene Classification

Álvaro Roberto Ferreira Jr., Gustavo Gustavo Henrique De Rosa, Joao Paulo Papa, Gustavo Carneiro, Fabio Augusto Faria

Auto-TLDR; Univariate Marginal Distribution Algorithm for Aerial Scene Classification Using Meta-Heuristic Optimization

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Aerial scene classification is a challenging task to be solved in the remote sensing area, whereas deep learning approaches, such as Convolutional Neural Networks (CNN), are being widely employed to overcome such a problem. Nevertheless, it is not straightforward to find single CNN models that can solve all aerial scene classification tasks, allowing the nurturing of a better alternative, which is to fuse CNN-based classifiers into an ensemble. However, an appropriate choice of the classifiers that will belong to the ensemble is a critical factor, as it is unfeasible to employ all the possible classifiers in the literature. Therefore, this work proposes a novel framework based on meta-heuristic optimization for creating optimized-ensembles in the context of aerial scene classification. The experimental results were performed across nine meta-heuristic algorithms and three aerial scene literature datasets, being compared in terms of effectiveness (accuracy), efficiency (execution time), and behavioral performance in different scenarios. Finally, one can observe that the Univariate Marginal Distribution Algorithm (UMDA) overcame popular literature meta-heuristic algorithms, such as Genetic Programming and Particle Swarm Optimization considering the adopted criteria in the performed experiments.

Reducing-Over-Time Tree for Event-Based Data

Shane Harrigan, Sonya Coleman, Dermot Kerr, Pratheepan Yogarajah, Zheng Fang, Chengdong Wu

Auto-TLDR; Reducing-Over-Time Binary Tree Structure for Event-Based Vision Data

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This paper presents a novel Reducing-Over-Time (ROT) binary tree structure for event-based vision data and subtypes of the tree structure. A framework is presented using ROT, that takes advantage of the self-balancing and self-pruning nature of the tree structure to extract spatial-temporal information. The ROT framework is paired with an established motion classification technique and performance is evaluated against other state-of-the-art techniques using four datasets. Additionally, the ROT framework as a processing platform is compared with other event-based vision processing platforms in terms of memory usage and is found to be one of the most memory efficient platforms available.

Supervised Classification Using Graph-Based Space Partitioning for Multiclass Problems

Nicola Yanev, Ventzeslav Valev, Adam Krzyzak, Karima Ben Suliman

Auto-TLDR; Box Classifier for Multiclass Classification

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We introduce and investigate in multiclass setting an efficient classifier which partitions the training data by means of multidimensional parallelepipeds called boxes. We show that multiclass classification problem at hand can be solved by integrating the heuristic minimum clique cover approach and the k-nearest neighbor rule. Our algorithm is motivated an algorithm for partitioning a graph into a minimal number of maximal. The main advantage of the new classifier called Box classifier is that it optimally utilizes the geometrical structure of the training set by decomposing the l-class problem (l > 2) into l binary classification problems. We discuss computational complexity of the proposed Box classifier. The extensive experiments performed on the simulated and real data for binary and multiclass problems show that in almost all cases the Box classifier performs significantly better than k-NN, SVM and decision trees.

Hyperspectral Imaging for Analysis and Classification of Plastic Waste

Jakub Kraśniewski, Łukasz Dąbała, Lewandowski Marcin

Auto-TLDR; A Hyperspectral Camera for Material Classification

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Environmental protection is one of the main challenges facing society nowadays. Even with constantly growing awareness, not all of the sorting can be done by people themselves - the differences between materials are not visible to the human eye. For that reason, we present the use of a hyperspectral camera as a capture device, which allows us to obtain the full spectrum of the material. In this work we propose a method for efficient recognition of the substance of an item. We conducted several experiments and analysis of the spectra of different materials in different conditions on a special measuring stand. That enabled identification of the best features, which can later be used during classification, which was confirmed during the extensive testing procedure.

A Systematic Investigation on Deep Architectures for Automatic Skin Lesions Classification

Pierluigi Carcagni, Marco Leo, Andrea Cuna, Giuseppe Celeste, Cosimo Distante

Auto-TLDR; RegNet: Deep Investigation of Convolutional Neural Networks for Automatic Classification of Skin Lesions

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Computer vision-based techniques are more and more employed in healthcare and medical fields nowadays in order, principally, to be as a support to the experienced medical staff to help them to make a quick and correct diagnosis. One of the hot topics in this arena concerns the automatic classification of skin lesions. Several promising works exist about it, mainly leveraging Convolutional Neural Networks (CNN), but proposed pipeline mainly rely on complex data preprocessing and there is no systematic investigation about how available deep models can actually reach the accuracy needed for real applications. In order to overcome these drawbacks, in this work, an end-to-end pipeline is introduced and some of the most recent Convolutional Neural Networks (CNNs) architectures are included in it and compared on the largest common benchmark dataset recently introduced. To this aim, for the first time in this application context, a new network design paradigm, namely RegNet, has been exploited to get the best models among a population of configurations. The paper introduces a threefold level of contribution and novelty with respect the previous literature: the deep investigation of several CNN architectures driving to a consistent improvement of the lesions recognition accuracy, the exploitation of a new network design paradigm able to study the behavior of populations of models and a deep discussion about pro and cons of each analyzed method paving the path towards new research lines.

MedZip: 3D Medical Images Lossless Compressor Using Recurrent Neural Network (LSTM)

Omniah Nagoor, Joss Whittle, Jingjing Deng, Benjamin Mora, Mark W. Jones

Auto-TLDR; Recurrent Neural Network for Lossless Medical Image Compression using Long Short-Term Memory

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As scanners produce higher-resolution and more densely sampled images, this raises the challenge of data storage, transmission and communication within healthcare systems. Since the quality of medical images plays a crucial role in diagnosis accuracy, medical imaging compression techniques are desired to reduce scan bitrate while guaranteeing lossless reconstruction. This paper presents a lossless compression method that integrates a Recurrent Neural Network (RNN) as a 3D sequence prediction model. The aim is to learn the long dependencies of the voxel's neighbourhood in 3D using Long Short-Term Memory (LSTM) network then compress the residual error using arithmetic coding. Experiential results reveal that our method obtains a higher compression ratio achieving 15% saving compared to the state-of-the-art lossless compression standards, including JPEG-LS, JPEG2000, JP3D, HEVC, and PPMd. Our evaluation demonstrates that the proposed method generalizes well to unseen modalities CT and MRI for the lossless compression scheme. To the best of our knowledge, this is the first lossless compression method that uses LSTM neural network for 16-bit volumetric medical image compression.

PIF: Anomaly detection via preference embedding

Filippo Leveni, Luca Magri, Giacomo Boracchi, Cesare Alippi

Auto-TLDR; PIF: Anomaly Detection with Preference Embedding for Structured Patterns

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We address the problem of detecting anomalies with respect to structured patterns. To this end, we conceive a novel anomaly detection method called PIF, that combines the advantages of adaptive isolation methods with the flexibility of preference embedding. Specifically, we propose to embed the data in a high dimensional space where an efficient tree-based method, PI-FOREST, is employed to compute an anomaly score. Experiments on synthetic and real datasets demonstrate that PIF favorably compares with state-of-the-art anomaly detection techniques, and confirm that PI-FOREST is better at measuring arbitrary distances and isolate points in the preference space.

A Hierarchical Framework for Leaf Instance Segmentation: Application to Plant Phenotyping

Swati Bhugra, Kanish Garg, Santanu Chaudhury, Brejesh Lall

Auto-TLDR; Under-segmentation of plant image using a graph based formulation to extract leaf shape knowledge for the task of leaf instance segmentation

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Image based analysis of plants is a high-throughput and non-invasive approach to study plant traits. Based on plant image data, the quantitative estimation of many plant traits (leaf area index, biomass etc.) is associated with accurate segmentation of individual leaves. However, this task is challenging due to the presence of overlapped leaves and lack of discernible boundaries between them. In addition, variability in leaf shapes and arrangement among different plant species limits the broad utilisation of current leaf instance segmentation algorithms. In this paper, we propose a novel framework that relies on under-segmentation of plant image using a graph based formulation to extract leaf shape knowledge for the task of leaf instance segmentation. These shape priors are generated based on leaf shape characteristics independent of plant species. We demonstrate the performance of the proposed framework across multiple plant dataset i.e. Arabidopsis, Komatsuna and Salad. Experimental results indicate its broad utility.

Personalized Models in Human Activity Recognition Using Deep Learning

Hamza Amrani, Daniela Micucci, Paolo Napoletano

Auto-TLDR; Incremental Learning for Personalized Human Activity Recognition

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Current sensor-based human activity recognition techniques that rely on a user-independent model struggle to generalize to new users and on to changes that a person may make over time to his or her way of carrying out activities. Incremental learning is a technique that allows to obtain personalized models which may improve the performance on the classifiers thanks to a continuous learning based on user data. Finally, deep learning techniques have been proven to be more effective with respect to traditional ones in the generation of user-independent models. The aim of our work is therefore to put together deep learning techniques with incremental learning in order to obtain personalized models that perform better with respect to user-independent model and personalized model obtained using traditional machine learning techniques. The experimentation was done by comparing the results obtained by a technique in the state of the art with those obtained by two neural networks (ResNet and a simplified CNN) on three datasets. The experimentation showed that neural networks adapt faster to a new user than the baseline.

Neural Machine Registration for Motion Correction in Breast DCE-MRI

Federica Aprea, Stefano Marrone, Carlo Sansone

Auto-TLDR; A Neural Registration Network for Dynamic Contrast Enhanced-Magnetic Resonance Imaging

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Cancer is one of the leading causes of death in the western world, with medical imaging playing a key role for early diagnosis. Focusing on breast cancer, one of the emerging imaging methodologies is Dynamic Contrast Enhanced-Magnetic Resonance Imaging (DCE-MRI). The flip side of using DCE-MRI is in its long acquisition times, often causing the patient to move, resulting in motion artefacts, namely distortions in the acquired image that can affect DCE-MRI analysis. A possible solution consists in the use of Motion Correction Techniques (MCTs), i.e. procedures intended to re-align the post-contrast image to the corresponding pre-contrast (reference) one. This task is particularly critic in DCE-MRI, due to brightness variations introduced in post-contrast images by the contrast-agent flowing. To face this problem, in this work we introduce a new MCT for breast DCE-MRI leveraging Physiologically Based PharmacoKinetic (PBPK) modelling and Artificial Neural Networks (ANN) to determine the most suitable physiologically-compliant transformation. To this aim, we propose a Neural Registration Network relying on a very task-specific loss function explicitly designed to take into account the contrast agent flowing while enforcing a correct re-alignment. We compared the obtained results against some conventional motion correction techniques, evaluating the performance on a patient-by-patient basis. Results clearly show the effectiveness of the proposed approach, resulting as the best performing even when compares against other techniques designed to take into account for brightness variations.

A Novel Random Forest Dissimilarity Measure for Multi-View Learning

Hongliu Cao, Simon Bernard, Robert Sabourin, Laurent Heutte

Auto-TLDR; Multi-view Learning with Random Forest Relation Measure and Instance Hardness

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Multi-view learning is a learning task in which data is described by several concurrent representations. Its main challenge is most often to exploit the complementarities between these representations to help solve a classification/regression task. This is a challenge that can be met nowadays if there is a large amount of data available for learning. However, this is not necessarily true for all real-world problems, where data are sometimes scarce (e.g. problems related to the medical environment). In these situations, an effective strategy is to use intermediate representations based on the dissimilarities between instances. This work presents new ways of constructing these dissimilarity representations, learning them from data with Random Forest classifiers. More precisely, two methods are proposed, which modify the Random Forest proximity measure, to adapt it to the context of High Dimension Low Sample Size (HDLSS) multi-view classification problems. The second method, based on an Instance Hardness measurement, is significantly more accurate than other state-of-the-art measurements including the original RF Proximity measurement and the Large Margin Nearest Neighbor (LMNN) metric learning measurement.

Deep Learning-Based Type Identification of Volumetric MRI Sequences

Jean Pablo De Mello, Thiago Paixão, Rodrigo Berriel, Mauricio Reyes, Alberto F. De Souza, Claudine Badue, Thiago Oliveira-Santos

Auto-TLDR; Deep Learning for Brain MRI Sequences Identification Using Convolutional Neural Network

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The analysis of Magnetic Resonance Imaging (MRI) sequences enables clinical professionals to monitor the progression of a brain tumor. As the interest for automatizing brain volume MRI analysis increases, it becomes convenient to have each sequence well identified. However, the unstandardized naming of MRI sequences make their identification difficult for automated systems, as well as make it difficult for researches to generate or use datasets for machine learning research. In face of that, we propose a system for identifying types of brain MRI sequences based on deep learning. By training a Convolutional Neural Network (CNN) based on 18-layer ResNet architecture, our system is able to classify a volumetric brain MRI as a T1, T1c, T2 or FLAIR sequence, or whether it does not belong to any of these classes. The network was trained with both pre-processed (BraTS dataset) and non-pre-processed (TCGA-GBM dataset) images with diverse acquisition protocols, requiring only a few layers of the volume for training. Our system is able to classify among sequence types with an accuracy of 96.27%.

Vehicle Classification from Profile Measures

Marco Patanè, Andrea Fusiello

Auto-TLDR; SliceNets: Convolutional Neural Networks for 3D Object Classification of Planar Slices

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This paper proposes two novel convolutional neural networks for 3D object classification, tailored to process point clouds that are composed of planar slices (profiles). In particular, the application that we are targeting is the classification of vehicles by scanning them along planes perpendicular to the driving direction, within the context of Electronic Toll Collection. Depending on sensors configurations, the distance between slices can be measured or not, thus resulting in two types of point clouds, namely metric and non-metric. In the latter case, two coordinates are indeed metric but the third one is merely a temporal index. Our networks, named SliceNets, extract metric information from the spatial coordinates and neighborhood information from the third one (either metric or temporal), thus being able to handle both types of point clouds. Experiments on two datasets collected in the field show the effectiveness of our networks in comparison with state-of-the-art ones.

Sketch-Based Community Detection Via Representative Node Sampling

Mahlagha Sedghi, Andre Beckus, George Atia

Auto-TLDR; Sketch-based Clustering of Community Detection Using a Small Sketch

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This paper proposes a sketch-based approach to the community detection problem which clusters the full graph through the use of an informative and concise sketch. The reduced sketch is built through an effective sampling approach which selects few nodes that best represent the complete graph and operates on a pairwise node similarity measure based on the average commute time. After sampling, the proposed algorithm clusters the nodes in the sketch, and then infers the cluster membership of the remaining nodes in the full graph based on their aggregate similarity to nodes in the partitioned sketch. By sampling nodes with strong representation power, our approach can improve the success rates over full graph clustering. In challenging cases with large node degree variation, our approach not only maintains competitive accuracy with full graph clustering despite using a small sketch, but also outperforms existing sampling methods. The use of a small sketch allows considerable storage savings, and computational and timing improvements for further analysis such as clustering and visualization. We provide numerical results on synthetic data based on the homogeneous, heterogeneous and degree corrected versions of the stochastic block model, as well as experimental results on real-world data.

Mean Decision Rules Method with Smart Sampling for Fast Large-Scale Binary SVM Classification

Alexandra Makarova, Mikhail Kurbakov, Valentina Sulimova

Auto-TLDR; Improving Mean Decision Rule for Large-Scale Binary SVM Problems

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This paper relies on the Mean Decision Rule (MDR) method for solving large-scale binary SVM problems. It consists in taking small random samples of the full dataset and separate training for each of them with consecutive averaging the respective individual decision rules to obtain a final one. This paper proposes two new approaches to improve it. The first proposed approach is a new sampling technique that exploits SVM and MDR properties to fast form so called smart samples by selecting only the objects, that are candidates to be the support ones. The proposed technique essentially increases MDR convergence and allows to reach the highest quality in less time. In the case of kernel-based MDR (KMDR) the proposed sampling technique allows additionally to reduce the number of support objects in the final decision rule and, as a result, to decrease the recognition time. The second proposed approach is a new data strategy to accelerate random access to large datasets stored in the traditional libsvm format. The proposed strategy allows to quickly extract random subsets of objects from a file and load them into RAM, and is it also suitable for any sampling-based methods, including stochastic gradient methods. Joint using of the proposed approaches with (K)MDR allows to obtain the best (or near the best) decision of large-scale binary SVM problems faster, compared to the existing SVM solvers.

Computational Data Analysis for First Quantization Estimation on JPEG Double Compressed Images

Sebastiano Battiato, Oliver Giudice, Francesco Guarnera, Giovanni Puglisi

Auto-TLDR; Exploiting Discrete Cosine Transform Coefficients for Multimedia Forensics

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Multimedia Forensics experts work consists in providing answers about integrity of a specific media content and from where it comes from. Exploitation of any traces from JPEG double compressed images is often one of the main investigative path to be used for these purposes. Thus it is fundamental to have tools and algorithms able to safely estimate the first quantization matrix to further proceed with camera model identification and related tasks. In this paper, a technique based on extensive simulation is proposed, with the aim to infer the first quantization for a certain numbers of Discrete Cosine Transform (DCT) coefficients exploiting local image statistics without using any a-priori knowledge. The method provides also a reliable confidence value for the estimation which is of great importance for forensic purposes. Experimental results w.r.t. the state-of-the-art demonstrate the effectiveness of the proposed technique both in terms of precision and overall reliability.

Approach for Document Detection by Contours and Contrasts

Daniil Tropin, Sergey Ilyuhin, Dmitry Nikolaev, Vladimir V. Arlazarov

Auto-TLDR; A countor-based method for arbitrary document detection on a mobile device

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This paper considers the task of arbitrary document detection performed on a mobile device. The classical contour-based approach often mishandles cases with occlusion, complex background, or blur. Region-based approach, which relies on the contrast between object and background, does not have limitations, however its known implementations are highly resource-consuming. We propose a modification of a countor-based method, in which the competing hypotheses of the contour location are ranked according to the contrast between the areas inside and outside the border. In the performed experiments such modification leads to the 40% decrease of alternatives ordering errors and 10% decrease of the overall number of detection errors. We updated state-of-the-art performance on the open MIDV-500 dataset and demonstrated competitive results with the state-of-the-art on the SmartDoc dataset.

Algorithm Recommendation for Data Streams

Jáder Martins Camboim De Sá, Andre Luis Debiaso Rossi, Gustavo Enrique De Almeida Prado Alves Batista, Luís Paulo Faina Garcia

Auto-TLDR; Meta-Learning for Algorithm Selection in Time-Changing Data Streams

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In the last decades, many companies are taking advantage of massive data generation at high frequencies through knowledge discovery to identify valuable information. Machine learning techniques can be employed for knowledge discovery, since they are able to extract patterns from data and induce models to predict future events. However, dynamic and evolving environments generate streams of data that usually are non-stationary. Models induced in these scenarios may perish over time due to seasonality or concept drift. The periodic retraining could help but the fixed algorithm's hypothesis space could no longer be appropriate. An alternative solution is to use meta-learning for periodic algorithm selection in time-changing environments, choosing the bias that best suits the current data. In this paper, we present an enhanced framework for data streams algorithm selection based on MetaStream. Our approach uses meta-learning and incremental learning to actively select the best algorithm for the current concept in a time-changing. Different from previous works, a set of cutting edge meta-features and an incremental learning approach in the meta-level based on LightGBM are used. The results show that this new strategy can improve the recommendation of the best algorithm more accurately in time-changing data.

Supporting Skin Lesion Diagnosis with Content-Based Image Retrieval

Stefano Allegretti, Federico Bolelli, Federico Pollastri, Sabrina Longhitano, Giovanni Pellacani, Costantino Grana

Auto-TLDR; Skin Images Retrieval Using Convolutional Neural Networks for Skin Lesion Classification and Segmentation

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Given the relevance of skin cancer, many attempts have been dedicated to the creation of automated devices that could assist both expert and beginner dermatologists towards fast and early diagnosis of skin lesions. In recent years, tasks such as skin lesion classification and segmentation have been extensively addressed with deep learning algorithms, which in some cases reach a diagnostic accuracy comparable to that of expert physicians. However, the general lack of interpretability and reliability severely hinders the ability of those approaches to actually support dermatologists in the diagnosis process. In this paper a novel skin images retrieval system is presented, which exploits features extracted by Convolutional Neural Networks to gather similar images from a publicly available dataset, in order to assist the diagnosis process of both expert and novice practitioners. In the proposed framework, Resnet-50 is initially trained for the classification of dermoscopic images; then, the feature extraction part is isolated, and an embedding network is build on top of it. The embedding learns an alternative representation, which allows to check image similarity by means of a distance measure. Experimental results reveal that the proposed method is able to select meaningful images, which can effectively boost the classification accuracy of human dermatologists.

An Integrated Approach of Deep Learning and Symbolic Analysis for Digital PDF Table Extraction

Mengshi Zhang, Daniel Perelman, Vu Le, Sumit Gulwani

Auto-TLDR; Deep Learning and Symbolic Reasoning for Unstructured PDF Table Extraction

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Deep learning has shown great success at interpreting unstructured data such as object recognition in images. Symbolic/logical-reasoning techniques have shown great success in interpreting structured data such as table extraction in webpages, custom text files, spreadsheets. The tables in PDF documents are often generated from such structured sources (text-based Word/Latex documents, spreadsheets, webpages) but end up being unstructured. We thus explore novel combinations of deep learning and symbolic reasoning techniques to build an effective solution for PDF table extraction. We evaluate effectiveness without granting partial credit for matching part of a table (which may cause silent errors in downstream data processing). Our method achieves a 0.725 F1 score (vs. 0.339 for the state-of-the-art) on detecting correct table bounds---a much stricter metric than the common one of detecting characters within tables---in a well known public benchmark (ICDAR 2013) and a 0.404 F1 score (vs. 0.144 for the state-of-the-art) on our private benchmark with more widely varied table structures.

An Intelligent Photographing Guidance System Based on Compositional Deep Features and Intepretable Machine Learning Model

Chin-Shyurng Fahn, Meng-Luen Wu, Sheng-Kuei Tsau

Auto-TLDR; Photography Guidance Using Interpretable Machine Learning

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Photography is the activity of recording precious moments which are often difficult to make up afterwards. Therefore, taking the correct picture under proper guidance assistance is important. Although there are many factors that can determine a good photo, in general, photos that do not follow the composition rules usually look bad that make the viewer feel uncomfortable. As a solution, in this paper, we propose an intelligent photographing guidance system using machine learning. The guidance is based on interpretable models that can give reasons for decisions. There are two kinds of features for guidance, which are traditional image features and deep features. Traditional features includes saliency map, sharpness map, prominent lines, and each of them are in multi-scale Gaussian pyramid. Deep feature is extracted during the establishment of a CNN based image composition classifier. We use these two kinds of features as inputs for tree based interpretable machine learning model to establish a feasible photographing guidance system. The guidance system references our composition classifier with 94.8% of accuracy, which the tree based interpretable model is capable of guiding camera users to alter image contents for obtaining better aesthetical compositions to take photos of good quality.

Point In: Counting Trees with Weakly Supervised Segmentation Network

Pinmo Tong, Shuhui Bu, Pengcheng Han

Auto-TLDR; Weakly Tree counting using Deep Segmentation Network with Localization and Mask Prediction

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For tree counting tasks, since traditional image processing methods require expensive feature engineering and are not end-to-end frameworks, this will cause additional noise and cannot be optimized overall, so this method has not been widely used in recent trends of tree counting application. Recently, many deep learning based approaches are designed for this task because of the powerful feature extracting ability. The representative way is bounding box based supervised method, but time-consuming annotations are indispensable for them. Moreover, these methods are difficult to overcome the occlusion or overlap. To solve this problem, we propose a weakly tree counting network (WTCNet) based on deep segmentation network with only point supervision. It can simultaneously complete tree counting with localization and output mask of each tree at the same time. We first adopt a novel feature extractor network (FENet) to get features of input images, and then an effective strategy is introduced to deal with different mask predictions. In the end, we propose a basic localization guidance accompany with rectification guidance to train the network. We create two different datasets and select an existing challenging plant dataset to evaluate our method on three different tasks. Experimental results show the good performance improvement of our method compared with other existing methods. Further study shows that our method has great potential to reduce human labor and provide effective ground-truth masks and the results show the superiority of our method over the advanced methods.

A Multi-Task Contextual Atrous Residual Network for Brain Tumor Detection & Segmentation

Ngan Le, Kashu Yamazaki, Quach Kha Gia, Thanh-Dat Truong, Marios Savvides

Auto-TLDR; Contextual Brain Tumor Segmentation Using 3D atrous Residual Networks and Cascaded Structures

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In recent years, deep neural networks have achieved state-of-the-art performance in a variety of recognition and segmentation tasks in medical imaging including brain tumor segmentation. We investigate that segmenting brain tumor is facing to the imbalanced data problem where the number of pixels belonging to background class (non tumor pixel) is much larger than the number of pixels belonging to foreground class (tumor pixel). To address this problem, we propose a multi-task network which is formed as a cascaded structure and designed to share the feature maps. Our model consists of two targets, i.e., (i) effectively differentiating brain tumor regions and (ii) estimating brain tumor masks. The first task is performed by our proposed contextual brain tumor detection network, which plays the role of an attention gate and focuses on the region around brain tumor only while ignore the background (non tumor area). Instead of processing every pixel, our contextual brain tumor detection network only processes contextual regions around ground-truth instances and this strategy helps to produce meaningful regions proposals. The second task is built upon a 3D atrous residual network and under an encode-decode network in order to effectively segment both large and small objects (brain tumor). Our 3D atrous residual network is designed with a skip connection to enables the gradient from the deep layers to be directly propagated to shallow layers, thus, features of different depths are preserved and used for refining each other. In order to incorporate larger contextual information in volume MRI data, our network is designed by 3D atrous convolution with various kernel sizes, which enlarges the receptive field of filters. Our proposed network has been evaluated on various datasets including BRATS2015, BRATS2017 and BRATS2018 datasets with both validation set and testing set. Our performance has been benchmarked by both region-based metrics and surface-based metrics. We also have conducted comparisons against state-of-the-art approaches.

Proximity Isolation Forests

Antonella Mensi, Manuele Bicego, David Tax

Auto-TLDR; Proximity Isolation Forests for Non-vectorial Data

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Isolation Forests are a very successful approach for solving outlier detection tasks. Isolation Forests are based on classical Random Forest classifiers that require feature vectors as input. There are many situations where vectorial data is not readily available, for instance when dealing with input sequences or strings. In these situations, one can extract higher level characteristics from the input, which is typically hard and often loses valuable information. An alternative is to define a proximity between the input objects, which can be more intuitive. In this paper we propose the Proximity Isolation Forests that extend the Isolation Forests to non-vectorial data. The introduced methodology has been thoroughly evaluated on 8 different problems and it achieves very good results also when compared to other techniques.

Categorizing the Feature Space for Two-Class Imbalance Learning

Rosa Sicilia, Ermanno Cordelli, Paolo Soda

Auto-TLDR; Efficient Ensemble of Classifiers for Minority Class Inference

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Class imbalance limits the performance of most learning algorithms, resulting in a low recognition rate for samples belonging to the minority class. Although there are different strategies to address this problem, methods that generate ensemble of classifiers have proven to be effective in several applications. This paper presents a new strategy to construct the training set of each classifier in the ensemble by exploiting information in the feature space that can give rise to unreliable classifications, which are determined by a novel algorithm here introduced. The performance of our proposal is compared against multiple standard ensemble approaches on 25 publicly available datasets, showing promising results.

A Comparison of Neural Network Approaches for Melanoma Classification

Maria Frasca, Michele Nappi, Michele Risi, Genoveffa Tortora, Alessia Auriemma Citarella

Auto-TLDR; Classification of Melanoma Using Deep Neural Network Methodologies

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Melanoma is the deadliest form of skin cancer and it is diagnosed mainly visually, starting from initial clinical screening and followed by dermoscopic analysis, biopsy and histopathological examination. A dermatologist’s recognition of melanoma may be subject to errors and may take some time to diagnose it. In this regard, deep learning can be useful in the study and classification of skin cancer. In particular, by classifying images with Deep Neural Network methodologies, it is possible to obtain comparable or even superior results compared to those of dermatologists. In this paper, we propose a methodology for the classification of melanoma by adopting different deep learning techniques applied to a common dataset, composed of images from the ISIC dataset and consisting of different types of skin diseases, including melanoma on which we applied a specific pre-processing phase. In particular, a comparison of the results is performed in order to select the best effective neural network to be applied to the problem of recognition and classification of melanoma. Moreover, we also evaluate the impact of the pre- processing phase on the final classification. Different metrics such as accuracy, sensitivity, and specificity have been selected to assess the goodness of the adopted neural networks and compare them also with the manual classification of dermatologists.

TreeRNN: Topology-Preserving Deep Graph Embedding and Learning

Yecheng Lyu, Ming Li, Xinming Huang, Ulkuhan Guler, Patrick Schaumont, Ziming Zhang

Auto-TLDR; TreeRNN: Recurrent Neural Network for General Graph Classification

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General graphs are difficult for learning due to their irregular structures. Existing works employ message passing along graph edges to extract local patterns using customized graph kernels, but few of them are effective for the integration of such local patterns into global features. In contrast, in this paper we study the methods to transfer the graphs into trees so that explicit orders are learned to direct the feature integration from local to global. To this end, we apply the breadth first search (BFS) to construct trees from the graphs, which adds direction to the graph edges from the center node to the peripheral nodes. In addition, we proposed a novel projection scheme that transfer the trees to image representations, which is suitable for conventional convolution neural networks (CNNs) and recurrent neural networks (RNNs). To best learn the patterns from the graph-tree-images, we propose TreeRNN, a 2D RNN architecture that recurrently integrates the image pixels by rows and columns to help classify the graph categories. We evaluate the proposed method on several graph classification datasets, and manage to demonstrate comparable accuracy with the state-of-the-art on MUTAG, PTC-MR and NCI1 datasets.

Weight Estimation from an RGB-D Camera in Top-View Configuration

Marco Mameli, Marina Paolanti, Nicola Conci, Filippo Tessaro, Emanuele Frontoni, Primo Zingaretti

Auto-TLDR; Top-View Weight Estimation using Deep Neural Networks

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The development of so-called soft-biometrics aims at providing information related to the physical and behavioural characteristics of a person. This paper focuses on bodyweight estimation based on the observation from a top-view RGB-D camera. In fact, the capability to estimate the weight of a person can be of help in many different applications, from health-related scenarios to business intelligence and retail analytics. To deal with this issue, a TVWE (Top-View Weight Estimation) framework is proposed with the aim of predicting the weight. The approach relies on the adoption of Deep Neural Networks (DNNs) that have been trained on depth data. Each network has also been modified in its top section to replace classification with prediction inference. The performance of five state-of-art DNNs has been compared, namely VGG16, ResNet, Inception, DenseNet and Efficient-Net. In addition, a convolutional auto-encoder has also been included for completeness. Considering the limited literature in this domain, the TVWE framework has been evaluated on a new publicly available dataset: “VRAI Weight estimation Dataset”, which also collects, for each subject, labels related to weight, gender, and height. The experimental results have demonstrated that the proposed methods are suitable for this task, bringing different and significant insights for the application of the solution in different domains.

Compression Strategies and Space-Conscious Representations for Deep Neural Networks

Giosuè Marinò, Gregorio Ghidoli, Marco Frasca, Dario Malchiodi

Auto-TLDR; Compression of Large Convolutional Neural Networks by Weight Pruning and Quantization

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Recent advances in deep learning have made available large, powerful convolutional neural networks (CNN) with state-of-the-art performance in several real-world applications. Unfortunately, these large-sized models have millions of parameters, thus they are not deployable on resource-limited platforms (e.g. where RAM is limited). Compression of CNNs thereby becomes a critical problem to achieve memory-efficient and possibly computationally faster model representations. In this paper, we investigate the impact of lossy compression of CNNs by weight pruning and quantization, and lossless weight matrix representations based on source coding. We tested several combinations of these techniques on four benchmark datasets for classification and regression problems, achieving compression rates up to 165 times, while preserving or improving the model performance.

Textual-Content Based Classification of Bundles of Untranscribed of Manuscript Images

José Ramón Prieto Fontcuberta, Enrique Vidal, Vicente Bosch, Carlos Alonso, Carmen Orcero, Lourdes Márquez

Auto-TLDR; Probabilistic Indexing for Text-based Classification of Manuscripts

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Content-based classification of manuscripts is an important task that is generally performed in archives and libraries by experts with a wealth of knowledge on the manuscripts contents. Unfortunately, many manuscript collections are so vast that it is not feasible to rely solely on experts to perform this task. Current approaches for textual-content-based manuscript classification generally require the handwritten images to be first transcribed into text -- but achieving sufficiently accurate transcripts is generally unfeasible for large sets of historical manuscripts. We propose a new approach to automatically perform this classification task which does not rely on any explicit image transcripts. It is based on ``probabilistic indexing'', a relatively novel technology which allows to effectively represent the intrinsic word-level uncertainty generally exhibited by handwritten text images. We assess the performance of this approach on a large collection of complex manuscripts from the Spanish Archivo General de Indias, with promising results.

3D Semantic Labeling of Photogrammetry Meshes Based on Active Learning

Mengqi Rong, Shuhan Shen, Zhanyi Hu

Auto-TLDR; 3D Semantic Expression of Urban Scenes Based on Active Learning

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As different urban scenes are similar but still not completely consistent, coupled with the complexity of labeling directly in 3D, high-level understanding of 3D scenes has always been a tricky problem. In this paper, we propose a procedural approach for 3D semantic expression of urban scenes based on active learning. We first start with a small labeled image set to fine-tune a semantic segmentation network and then project its probability map onto a 3D mesh model for fusion, finally outputs a 3D semantic mesh model in which each facet has a semantic label and a heat model showing each facet’s confidence. Our key observation is that our algorithm is iterative, in each iteration, we use the output semantic model as a supervision to select several valuable images for annotation to co-participate in the fine-tuning for overall improvement. In this way, we reduce the workload of labeling but not the quality of 3D semantic model. Using urban areas from two different cities, we show the potential of our method and demonstrate its effectiveness.

SAILenv: Learning in Virtual Visual Environments Made Simple

Enrico Meloni, Luca Pasqualini, Matteo Tiezzi, Marco Gori, Stefano Melacci

Auto-TLDR; SAILenv: A Simple and Customized Platform for Visual Recognition in Virtual 3D Environment

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Recently, researchers in Machine Learning algorithms, Computer Vision scientists, engineers and others, showed a growing interest in 3D simulators as a mean to artificially create experimental settings that are very close to those in the real world. However, most of the existing platforms to interface algorithms with 3D environments are often designed to setup navigation-related experiments, to study physical interactions, or to handle ad-hoc cases that are not thought to be customized, sometimes lacking a strong photorealistic appearance and an easy-to-use software interface. In this paper, we present a novel platform, SAILenv, that is specifically designed to be simple and customizable, and that allows researchers to experiment visual recognition in virtual 3D scenes. A few lines of code are needed to interface every algorithm with the virtual world, and non-3D-graphics experts can easily customize the 3D environment itself, exploiting a collection of photorealistic objects. Our framework yields pixel-level semantic and instance labeling, depth, and, to the best of our knowledge, it is the only one that provides motion-related information directly inherited from the 3D engine. The client-server communication operates at a low level, avoiding the overhead of HTTP-based data exchanges. We perform experiments using a state-of-the-art object detector trained on real-world images, showing that it is able to recognize the photorealistic 3D objects of our environment. The computational burden of the optical flow compares favourably with the estimation performed using modern GPU-based convolutional networks or more classic implementations. We believe that the scientific community will benefit from the easiness and high-quality of our framework to evaluate newly proposed algorithms in their own customized realistic conditions.

A Novel Computer-Aided Diagnostic System for Early Assessment of Hepatocellular Carcinoma

Ahmed Alksas, Mohamed Shehata, Gehad Saleh, Ahmed Shaffie, Ahmed Soliman, Mohammed Ghazal, Hadil Abukhalifeh, Abdel Razek Ahmed, Ayman El-Baz

Auto-TLDR; Classification of Liver Tumor Lesions from CE-MRI Using Structured Structural Features and Functional Features

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Early assessment of liver cancer patients with hepatocellular carcinoma (HCC) is of immense importance to provide the proper treatment plan. In this paper, we have developed a two-stage classification computer-aided diagnostic (CAD) system that has the ability to detect and grade the liver observations from multiphase contrast enhanced magnetic resonance imaging (CE-MRI). The proposed approach consists of three main steps. First, a pre-processing is applied to the CE-MRI scans to delineate the tumor lesions that will be used as an ROI across the four different phases of the CE-MRI, (namely, the pre-contrast, late-arterial, portal-venous, and delayed-contrast). Second, a group of three features are modeled to provide a quantitative discrimination between the tumor lesions; namely: i) the tumor appearance that is modeled using a set of texture features, (namely; the first-order histogram, second-order gray-level co-occurrence matrix, and second-order gray-level run-length matrix), to capture any discrimination that may appear in the lesion texture, ii) the spherical harmonics (SH) based shape features that have the ability to describe the shape complexity of the liver tumors, and iii) the functional features that are based on the calculation of the wash-in/wash-out through that evaluate the intensity changes across the post-contrast phases. Finally, the aforementioned individual features were then integrated together to obtain the combined features to be fed to a machine learning classifier towards getting the final diagnostic decision. The proposed CAD system has been tested using hepatic observations that was obtained from 85 participating patients, 34 patients with benign tumors, 34 patients with intermediate tumors and 34 with malignant tumors. Using a random forests based classifier with a leave-one-subject-out (LOSO) cross-validation, the developed CAD system achieved an 87.1% accuracy in distinguishing the malignant, intermediate and benign tumors. The classification performance is then evaluated using k-fold (5/10-fold) cross-validation approach to examine the robustness of the system. The LR-1 lesions were classified from LR-2 benign lesions with 91.2% accuracy, while 85.3% accuracy was achieved differentiating between LR-4 and LR-5 malignant tumors. The obtained results hold a promise of the proposed framework to be reliably used as a noninvasive diagnostic tool for the early detection and grading of liver cancer tumors.

Making Every Label Count: Handling Semantic Imprecision by Integrating Domain Knowledge

Clemens-Alexander Brust, Björn Barz, Joachim Denzler

Auto-TLDR; Class Hierarchies for Imprecise Label Learning and Annotation eXtrapolation

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Noisy data, crawled from the web or supplied by volunteers such as Mechanical Turkers or citizen scientists, is considered an alternative to professionally labeled data. There has been research focused on mitigating the effects of label noise. It is typically modeled as inaccuracy, where the correct label is replaced by an incorrect label from the same set. We consider an additional dimension of label noise: imprecision. For example, a non-breeding snow bunting is labeled as a bird. This label is correct, but not as precise as the task requires. Standard softmax classifiers cannot learn from such a weak label because they consider all classes mutually exclusive, which non-breeding snow bunting and bird are not. We propose CHILLAX (Class Hierarchies for Imprecise Label Learning and Annotation eXtrapolation), a method based on hierarchical classification, to fully utilize labels of any precision. Experiments on noisy variants of NABirds and ILSVRC2012 show that our method outperforms strong baselines by as much as 16.4 percentage points, and the current state of the art by up to 3.9 percentage points.