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Bridging the Gap between Natural and Medical Images through Deep Colorization

Lia Morra, Luca Piano, Fabrizio Lamberti, Tatiana Tommasi

Auto-TLDR; Transfer Learning for Diagnosis on X-ray Images Using Color Adaptation

Abstract Slides Poster

Deep learning has thrived by training on large-scale datasets. However, in many applications, as for medical image diagnosis, getting massive amount of data is still prohibitive due to privacy, lack of acquisition homogeneity and annotation cost. In this scenario transfer learning from natural image collections is a standard practice that attempts to tackle shape, texture and color discrepancy all at once through pretrained model fine-tuning. In this work we propose to disentangle those challenges and design a dedicated network module that focuses on color adaptation. We combine learning from scratch of the color module with transfer learning of different classification backbones obtaining an end-to-end, easy-to-train architecture for diagnostic image recognition on X-ray images. Extensive experiments show how our approach is particularly efficient in case of data scarcity and provides a new path for further transferring the learned color information across multiple medical datasets.

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The Color Out of Space: Learning Self-Supervised Representations for Earth Observation Imagery

Stefano Vincenzi, Angelo Porrello, Pietro Buzzega, Marco Cipriano, Pietro Fronte, Roberto Cuccu, Carla Ippoliti, Annamaria Conte, Simone Calderara

Auto-TLDR; Satellite Image Representation Learning for Remote Sensing

Abstract Slides Poster Similar

The recent growth in the number of satellite images fosters the development of effective deep-learning techniques for Remote Sensing (RS). However, their full potential is untapped due to the lack of large annotated datasets. Such a problem is usually countered by fine-tuning a feature extractor that is previously trained on the ImageNet dataset. Unfortunately, the domain of natural images differs from the RS one, which hinders the final performance. In this work, we propose to learn meaningful representations from satellite imagery, leveraging its high-dimensionality spectral bands to reconstruct the visible colors. We conduct experiments on land cover classification (BigEarthNet) and West Nile Virus detection, showing that colorization is a solid pretext task for training a feature extractor. Furthermore, we qualitatively observe that guesses based on natural images and colorization rely on different parts of the input. This paves the way to an ensemble model that eventually outperforms both the above-mentioned techniques.

Fine-Tuning Convolutional Neural Networks: A Comprehensive Guide and Benchmark Analysis for Glaucoma Screening

Amed Mvoulana, Rostom Kachouri, Mohamed Akil

Auto-TLDR; Fine-tuning Convolutional Neural Networks for Glaucoma Screening

Abstract Slides Poster Similar

This work aimed at giving a comprehensive and in-detailed guide on the route to fine-tuning Convolutional Neural Networks (CNNs) for glaucoma screening. Transfer learning consists in a promising alternative to train CNNs from stratch, to avoid the huge data and resources requirements. After a thorough study of five state-of-the-art CNNs architectures, a complete and well-explained strategy for fine-tuning these networks is proposed, using hyperparameter grid-searching and two-phase training approach. Excellent performance is reached on model evaluation, with a 0.9772 AUROC validation rate, giving arise to reliable glaucoma diagosis-help systems. Also, a benchmark analysis is conducted across all fine-tuned models, studying them according to performance indices such as model complexity and size, AUROC density and inference time. This in-depth analysis allows a rigorous comparison between model characteristics, and is useful for giving practioners important trademarks for prospective applications and deployments.

Investigating and Exploiting Image Resolution for Transfer Learning-Based Skin Lesion Classification

Amirreza Mahbod, Gerald Schaefer, Chunliang Wang, Rupert Ecker, Georg Dorffner, Isabella Ellinger

Auto-TLDR; Fine-tuned Neural Networks for Skin Lesion Classification Using Dermoscopic Images

Abstract Slides Poster Similar

Skin cancer is among the most common cancer types. Dermoscopic image analysis improves the diagnostic accuracy for detection of malignant melanoma and other pigmented skin lesions when compared to unaided visual inspection. Hence, computer-based methods to support medical experts in the diagnostic procedure are of great interest. Fine-tuning pre-trained convolutional neural networks (CNNs) has been shown to work well for skin lesion classification. Pre-trained CNNs are usually trained with natural images of a fixed image size which is typically significantly smaller than captured skin lesion images and consequently dermoscopic images are downsampled for fine-tuning. However, useful medical information may be lost during this transformation. In this paper, we explore the effect of input image size on skin lesion classification performance of fine-tuned CNNs. For this, we resize dermoscopic images to different resolutions, ranging from 64x64 to 768x768 pixels and investigate the resulting classification performance of three well-established CNNs, namely DenseNet-121, ResNet-18, and ResNet-50. Our results show that using very small images (of size 64x64 pixels) degrades the classification performance, while images of size 128x128 pixels and above support good performance with larger image sizes leading to slightly improved classification. We further propose a novel fusion approach based on a three-level ensemble strategy that exploits multiple fine-tuned networks trained with dermoscopic images at various sizes. When applied on the ISIC 2017 skin lesion classification challenge, our fusion approach yields an area under the receiver operating characteristic curve of 89.2% and 96.6% for melanoma classification and seborrheic keratosis classification, respectively, outperforming state-of-the-art algorithms.

Planar 3D Transfer Learning for End to End Unimodal MRI Unbalanced Data Segmentation

Martin Kolarik, Radim Burget, Carlos M. Travieso-Gonzalez, Jan Kocica

Auto-TLDR; Planar 3D Res-U-Net Network for Unbalanced 3D Image Segmentation using Fluid Attenuation Inversion Recover

Abstract Slides Similar

We present a novel approach of 2D to 3D transfer learning based on mapping pre-trained 2D convolutional neural network weights into planar 3D kernels. The method is validated by proposed planar 3D res-u-net network with encoder transferred from the 2D VGG-16 which is applied for a single-stage unbalanced 3D image data segmentation. In particular, we evaluate the method on the MICCAI 2016 MS lesion segmentation challenge dataset utilizing solely Fluid Attenuation Inversion Recover (FLAIR) sequence without brain extraction for training and inference to simulate real medical praxis. The planar 3D res-u-net network performed the best both in sensitivity and Dice score amongst end to end methods processing raw MRI scans and achieved comparable Dice score to a state-of-the-art unimodal not end to end approach. Complete source code was released under the open-source license and this paper is in compliance with the Machine learning Reproducibility Checklist. By implementing practical transfer learning for 3D data representation we were able to successfully segment heavily unbalanced data without selective sampling and achieved more reliable results using less training data in single modality. From medical perspective, the unimodal approach gives an advantage in real praxis as it does not require co-registration nor additional scanning time during examination. Although modern medical imaging methods capture high resolution 3D anatomy scans suitable for computer aided detection system processing, deployment of automatic systems for interpretation of radiology imaging is still rather theoretical in many medical areas. Our work aims to bridge the gap offering solution for partial research questions.

Joint Supervised and Self-Supervised Learning for 3D Real World Challenges

Antonio Alliegro, Davide Boscaini, Tatiana Tommasi

Auto-TLDR; Self-supervision for 3D Shape Classification and Segmentation in Point Clouds

Abstract Slides Similar

Point cloud processing and 3D shape understanding are very challenging tasks for which deep learning techniques have demonstrated great potentials. Still further progresses are essential to allow artificial intelligent agents to interact with the real world. In many practical conditions the amount of annotated data may be limited and integrating new sources of knowledge becomes crucial to support autonomous learning. Here we consider several scenarios involving synthetic and real world point clouds where supervised learning fails due to data scarcity and large domain gaps. We propose to enrich standard feature representations by leveraging self-supervision through a multi-task model that can solve a 3D puzzle while learning the main task of shape classification or part segmentation. An extensive analysis investigating few-shot, transfer learning and cross-domain settings shows the effectiveness of our approach with state-of-the-art results for 3D shape classification and part segmentation.

Rethinking Domain Generalization Baselines

Francesco Cappio Borlino, Antonio D'Innocente, Tatiana Tommasi

Auto-TLDR; Style Transfer Data Augmentation for Domain Generalization

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Despite being very powerful in standard learning settings, deep learning models can be extremely brittle when deployed in scenarios different from those on which they were trained. Domain generalization methods investigate this problem and data augmentation strategies have shown to be helpful tools to increase data variability, supporting model robustness across domains. In our work we focus on style transfer data augmentation and we present how it can be implemented with a simple and inexpensive strategy to improve generalization. Moreover, we analyze the behavior of current state of the art domain generalization methods when integrated with this augmentation solution: our thorough experimental evaluation shows that their original effect almost always disappears with respect to the augmented baseline. This issue open new scenarios for domain generalization research, highlighting the need of novel methods properly able to take advantage of the introduced data variability.

A Systematic Investigation on Deep Architectures for Automatic Skin Lesions Classification

Pierluigi Carcagni, Marco Leo, Andrea Cuna, Giuseppe Celeste, Cosimo Distante

Auto-TLDR; RegNet: Deep Investigation of Convolutional Neural Networks for Automatic Classification of Skin Lesions

Abstract Slides Poster Similar

Computer vision-based techniques are more and more employed in healthcare and medical fields nowadays in order, principally, to be as a support to the experienced medical staff to help them to make a quick and correct diagnosis. One of the hot topics in this arena concerns the automatic classification of skin lesions. Several promising works exist about it, mainly leveraging Convolutional Neural Networks (CNN), but proposed pipeline mainly rely on complex data preprocessing and there is no systematic investigation about how available deep models can actually reach the accuracy needed for real applications. In order to overcome these drawbacks, in this work, an end-to-end pipeline is introduced and some of the most recent Convolutional Neural Networks (CNNs) architectures are included in it and compared on the largest common benchmark dataset recently introduced. To this aim, for the first time in this application context, a new network design paradigm, namely RegNet, has been exploited to get the best models among a population of configurations. The paper introduces a threefold level of contribution and novelty with respect the previous literature: the deep investigation of several CNN architectures driving to a consistent improvement of the lesions recognition accuracy, the exploitation of a new network design paradigm able to study the behavior of populations of models and a deep discussion about pro and cons of each analyzed method paving the path towards new research lines.

Dealing with Scarce Labelled Data: Semi-Supervised Deep Learning with Mix Match for Covid-19 Detection Using Chest X-Ray Images

Saúl Calderón Ramirez, Raghvendra Giri, Shengxiang Yang, Armaghan Moemeni, Mario Umaña, David Elizondo, Jordina Torrents-Barrena, Miguel A. Molina-Cabello

Auto-TLDR; Semi-supervised Deep Learning for Covid-19 Detection using Chest X-rays

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Coronavirus (Covid-19) is spreading fast, infecting people through contact in various forms including droplets from sneezing and coughing. Therefore, the detection of infected subjects in an early, quick and cheap manner is urgent. Currently available tests are scarce and limited to people in danger of serious illness. The application of deep learning to chest X-ray images for Covid-19 detection is an attractive approach. However, this technology usually relies on the availability of large labelled datasets, a requirement hard to meet in the context of a virus outbreak. To overcome this challenge, a semi-supervised deep learning model using both labelled and unlabelled data is proposed. We developed and tested a semi-supervised deep learning framework based on the Mix Match architecture to classify chest X-rays into Covid-19, pneumonia and healthy cases. The presented approach was calibrated using two publicly available datasets. The results show an accuracy increase of around $15\%$ under low labelled / unlabelled data ratio. This indicates that our semi-supervised framework can help improve performance levels towards Covid-19 detection when the amount of high-quality labelled data is scarce. Also, we introduce a semi-supervised deep learning boost coefficient which is meant to ease the scalability of our approach and performance comparison.

Trainable Spectrally Initializable Matrix Transformations in Convolutional Neural Networks

Michele Alberti, Angela Botros, Schuetz Narayan, Rolf Ingold, Marcus Liwicki, Mathias Seuret

Auto-TLDR; Trainable and Spectrally Initializable Matrix Transformations for Neural Networks

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In this work, we introduce a new architectural component to Neural Networks (NN), i.e., trainable and spectrally initializable matrix transformations on feature maps. While previous literature has already demonstrated the possibility of adding static spectral transformations as feature processors, our focus is on more general trainable transforms. We study the transforms in various architectural configurations on four datasets of different nature: from medical (ColorectalHist, HAM10000) and natural (Flowers) images to historical documents (CB55). With rigorous experiments that control for the number of parameters and randomness, we show that networks utilizing the introduced matrix transformations outperform vanilla neural networks. The observed accuracy increases appreciably across all datasets. In addition, we show that the benefit of spectral initialization leads to significantly faster convergence, as opposed to randomly initialized matrix transformations. The transformations are implemented as auto-differentiable PyTorch modules that can be incorporated into any neural network architecture. The entire code base is open-source.

Confidence Calibration for Deep Renal Biopsy Immunofluorescence Image Classification

Federico Pollastri, Juan Maroñas, Federico Bolelli, Giulia Ligabue, Roberto Paredes, Riccardo Magistroni, Costantino Grana

Auto-TLDR; A Probabilistic Convolutional Neural Network for Immunofluorescence Classification in Renal Biopsy

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With this work we tackle immunofluorescence classification in renal biopsy, employing state-of-the-art Convolutional Neural Networks. In this setting, the aim of the probabilistic model is to assist an expert practitioner towards identifying the location pattern of antibody deposits within a glomerulus. Since modern neural networks often provide overconfident outputs, we stress the importance of having a reliable prediction, demonstrating that Temperature Scaling, a recently introduced re-calibration technique, can be successfully applied to immunofluorescence classification in renal biopsy. Experimental results demonstrate that the designed model yields good accuracy on the specific task, and that Temperature Scaling is able to provide reliable probabilities, which are highly valuable for such a task given the low inter-rater agreement.

Robust Pedestrian Detection in Thermal Imagery Using Synthesized Images

My Kieu, Lorenzo Berlincioni, Leonardo Galteri, Marco Bertini, Andrew Bagdanov, Alberto Del Bimbo

Auto-TLDR; Improving Pedestrian Detection in the thermal domain using Generative Adversarial Network

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In this paper we propose a method for improving pedestrian detection in the thermal domain using two stages: first, a generative data augmentation approach is used, then a domain adaptation method using generated data adapts an RGB pedestrian detector. Our model, based on the Least-Squares Generative Adversarial Network, is trained to synthesize realistic thermal versions of input RGB images which are then used to augment the limited amount of labeled thermal pedestrian images available for training. We apply our generative data augmentation strategy in order to adapt a pretrained YOLOv3 pedestrian detector to detection in the thermal-only domain. Experimental results demonstrate the effectiveness of our approach: using less than 50% of available real thermal training data, and relying on synthesized data generated by our model in the domain adaptation phase, our detector achieves state-of-the-art results on the KAIST Multispectral Pedestrian Detection Benchmark; even if more real thermal data is available adding GAN generated images to the training data results in improved performance, thus showing that these images act as an effective form of data augmentation. To the best of our knowledge, our detector achieves the best single-modality detection results on KAIST with respect to the state-of-the-art.

Deep Recurrent-Convolutional Model for AutomatedSegmentation of Craniomaxillofacial CT Scans

Francesca Murabito, Simone Palazzo, Federica Salanitri Proietto, Francesco Rundo, Ulas Bagci, Daniela Giordano, Rosalia Leonardi, Concetto Spampinato

Auto-TLDR; Automated Segmentation of Anatomical Structures in Craniomaxillofacial CT Scans using Fully Convolutional Deep Networks

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In this paper we define a deep learning architecture for automated segmentation of anatomical structures in Craniomaxillofacial (CMF) CT scans that leverages the recent success of encoder-decoder models for semantic segmentation of natural images. In particular, we propose a fully convolutional deep network that combines the advantages of recent fully convolutional models, such as Tiramisu, with squeeze-and-excitation blocks for feature recalibration, integrated with convolutional LSTMs to model spatio-temporal correlations between consecutive slices. The proposed segmentation network shows superior performance and generalization capabilities (to different structures and imaging modalities) than state of the art methods on automated segmentation of CMF structures (e.g., mandibles and airways) in several standard benchmarks (e.g., MICCAI datasets) and on new datasets proposed herein, effectively facing shape variability.

Semi-Supervised Deep Learning Techniques for Spectrum Reconstruction

Adriano Simonetto, Vincent Parret, Alexander Gatto, Piergiorgio Sartor, Pietro Zanuttigh

Auto-TLDR; hyperspectral data estimation from RGB data using semi-supervised learning

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State-of-the-art approaches for the estimation of hyperspectral images (HSI) from RGB data are mostly based on deep learning techniques but due to the lack of training data their performances are limited to uncommon scenarios where a large hyperspectral database is available. In this work we present a family of novel deep learning schemes for hyperspectral data estimation able to work when the hyperspectral information at our disposal is limited. Firstly, we introduce a learning scheme exploiting a physical model based on the backward mapping to the RGB space and total variation regularization that can be trained with a limited amount of HSI images. Then, we propose a novel semi-supervised learning scheme able to work even with just a few pixels labeled with hyperspectral information. Finally, we show that the approach can be extended to a transfer learning scenario. The proposed techniques allow to reach impressive performances while requiring only some HSI images or just a few pixels for the training.

Self-Supervised Learning for Astronomical Image Classification

Ana Martinazzo, Mateus Espadoto, Nina S. T. Hirata

Auto-TLDR; Unlabeled Astronomical Images for Deep Neural Network Pre-training

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In Astronomy, a huge amount of image data is generated daily by photometric surveys, which scan the sky to collect data from stars, galaxies and other celestial objects. In this paper, we propose a technique to leverage unlabeled astronomical images to pre-train deep convolutional neural networks, in order to learn a domain-specific feature extractor which improves the results of machine learning techniques in setups with small amounts of labeled data available. We show that our technique produces results which are in many cases better than using ImageNet pre-training.

Aerial Road Segmentation in the Presence of Topological Label Noise

Corentin Henry, Friedrich Fraundorfer, Eleonora Vig

Auto-TLDR; Improving Road Segmentation with Noise-Aware U-Nets for Fine-Grained Topology delineation

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The availability of large-scale annotated datasets has enabled Fully-Convolutional Neural Networks to reach outstanding performance on road extraction in aerial images. However, high-quality pixel-level annotation is expensive to produce and even manually labeled data often contains topological errors. Trading off quality for quantity, many datasets rely on already available yet noisy labels, for example from OpenStreetMap. In this paper, we explore the training of custom U-Nets built with ResNet and DenseNet backbones using noise-aware losses that are robust towards label omission and registration noise. We perform an extensive evaluation of standard and noise-aware losses, including a novel Bootstrapped DICE-Coefficient loss, on two challenging road segmentation benchmarks. Our losses yield a consistent improvement in overall extraction quality and exhibit a strong capacity to cope with severe label noise. Our method generalizes well to two other fine-grained topology delineation tasks: surface crack detection for quality inspection and cell membrane extraction in electron microscopy imagery.

Inception Based Deep Learning Architecture for Tuberculosis Screening of Chest X-Rays

Dipayan Das, K.C. Santosh, Umapada Pal

Auto-TLDR; End to End CNN-based Chest X-ray Screening for Tuberculosis positive patients in the severely resource constrained regions of the world

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The motivation for this work is the primary need of screening Tuberculosis (TB) positive patients in the severely resource constrained regions of the world. Chest X-ray (CXR) is considered to be a promising indicator for the onset of TB, but the lack of skilled radiologists in such regions degrades the situation. Therefore, several computer aided diagnosis (CAD) systems have been proposed to solve the decision making problem, which includes hand engineered feature extraction methods to deep learning or Convolutional Neural Network (CNN) based methods. Feature extraction, being a time and resource intensive process, often delays the process of mass screening. Hence an end to end CNN architecture is proposed in this work to solve the problem. Two benchmark CXR datasets have been used in this work, collected from Shenzhen (China) and Montgomery County (USA), on which the proposed methodology achieved a maximum abnormality detection accuracy (ACC) of 91.7\% (0.96 AUC) and 87.47\% (0.92 AUC) respectively. To the greatest of our knowledge, the obtained results are marginally superior to the state of the art results that have solely used deep learning methodologies on the aforementioned datasets.

A Close Look at Deep Learning with Small Data

Lorenzo Brigato, Luca Iocchi

Auto-TLDR; Low-Complex Neural Networks for Small Data Conditions

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In this work, we perform a wide variety of experiments with different Deep Learning architectures in small data conditions. We show that model complexity is a critical factor when only a few samples per class are available. Differently from the literature, we improve the state of the art using low complexity models. We show that standard convolutional neural networks with relatively few parameters are effective in this scenario. In many of our experiments, low complexity models outperform state-of-the-art architectures. Moreover, we propose a novel network that uses an unsupervised loss to regularize its training. Such architecture either improves the results either performs comparably well to low capacity networks. Surprisingly, experiments show that the dynamic data augmentation pipeline is not beneficial in this particular domain. Statically augmenting the dataset might be a promising research direction while dropout maintains its role as a good regularizer.

Rethinking of Deep Models Parameters with Respect to Data Distribution

Shitala Prasad, Dongyun Lin, Yiqun Li, Sheng Dong, Zaw Min Oo

Auto-TLDR; A progressive stepwise training strategy for deep neural networks

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The performance of deep learning models are driven by various parameters but to tune all of them every time, for every dataset, is a heuristic practice. In this paper, unlike the common practice of decaying the learning rate, we propose a step-wise training strategy where the learning rate and the batch size are tuned based on the dataset size. Here, the given dataset size is progressively increased during the training to boost the network performance without saturating the learning curve, after certain epochs. We conducted extensive experiments on multiple networks and datasets to validate the proposed training strategy. The experimental results proves our hypothesis that the learning rate, the batch size and the data size are interrelated and can improve the network accuracy if an optimal progressive stepwise training strategy is applied. The proposed strategy also the overall training computational cost is reduced.

Few-Shot Few-Shot Learning and the Role of Spatial Attention

Yann Lifchitz, Yannis Avrithis, Sylvaine Picard

Auto-TLDR; Few-shot Learning with Pre-trained Classifier on Large-Scale Datasets

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Few-shot learning is often motivated by the ability of humans to learn new tasks from few examples. However, standard few-shot classification benchmarks assume that the representation is learned on a limited amount of base class data, ignoring the amount of prior knowledge that a human may have accumulated before learning new tasks. At the same time, even if a powerful representation is available, it may happen in some domain that base class data are limited or non-existent. This motivates us to study a problem where the representation is obtained from a classifier pre-trained on a large-scale dataset of a different domain, assuming no access to its training process, while the base class data are limited to few examples per class and their role is to adapt the representation to the domain at hand rather than learn from scratch. We adapt the representation in two stages, namely on the few base class data if available and on the even fewer data of new tasks. In doing so, we obtain from the pre-trained classifier a spatial attention map that allows focusing on objects and suppressing background clutter. This is important in the new problem, because when base class data are few, the network cannot learn where to focus implicitly. We also show that a pre-trained network may be easily adapted to novel classes, without meta-learning.

Enhancing Semantic Segmentation of Aerial Images with Inhibitory Neurons

Ihsan Ullah, Sean Reilly, Michael Madden

Auto-TLDR; Lateral Inhibition in Deep Neural Networks for Object Recognition and Semantic Segmentation

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In a Convolutional Neural Network, each neuron in the output feature map takes input from the neurons in its receptive field. This receptive field concept plays a vital role in today's deep neural networks. However, inspired by neuro-biological research, it has been proposed to add inhibitory neurons outside the receptive field, which may enhance the performance of neural network models. In this paper, we begin with deep network architectures such as VGG and ResNet, and propose an approach to add lateral inhibition in each output neuron to reduce its impact on its neighbours, both in fine-tuning pre-trained models and training from scratch. Our experiments show that notable improvements upon prior baseline deep models can be achieved. A key feature of our approach is that it is easy to add to baseline models; it can be adopted in any model containing convolution layers, and we demonstrate its value in applications including object recognition and semantic segmentation of aerial images, where we show state-of-the-art result on the Aeroscape dataset. On semantic segmentation tasks, our enhancement shows 17.43% higher mIoU than a single baseline model on a single source (the Aeroscape dataset), 13.43% higher performance than an ensemble model on the same single source, and 7.03% higher than an ensemble model on multiple sources (segmentation datasets). Our experiments illustrate the potential impact of using inhibitory neurons in deep learning models, and they also show better results than the baseline models that have standard convolutional layer.

Improving Model Accuracy for Imbalanced Image Classification Tasks by Adding a Final Batch Normalization Layer: An Empirical Study

Veysel Kocaman, Ofer M. Shir, Thomas Baeck

Auto-TLDR; Exploiting Batch Normalization before the Output Layer in Deep Learning for Minority Class Detection in Imbalanced Data Sets

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Some real-world domains, such as Agriculture and Healthcare, comprise early-stage disease indications whose recording constitutes a rare event, and yet, whose precise detection at that stage is critical. In this type of highly imbalanced classification problems, which encompass complex features, deep learning (DL) is much needed because of its strong detection capabilities. At the same time, DL is observed in practice to favor majority over minority classes and consequently suffer from inaccurate detection of the targeted early-stage indications. To simulate such scenarios, we artificially generate skewness (99% vs. 1%) for certain plant types out of the PlantVillage dataset as a basis for classification of scarce visual cues through transfer learning. By randomly and unevenly picking healthy and unhealthy samples from certain plant types to form a training set, we consider a base experiment as fine-tuning ResNet34 and VGG19 architectures and then testing the model performance on a balanced dataset of healthy and unhealthy images. We empirically observe that the initial F1 test score jumps from 0.29 to 0.95 for the minority class upon adding a final Batch Normalization (BN) layer just before the output layer in VGG19. We demonstrate that utilizing an additional BN layer before the output layer in modern CNN architectures has a considerable impact in terms of minimizing the training time and testing error for minority classes in highly imbalanced data sets. Moreover, when the final BN is employed, trying to minimize validation and training losses may not be an optimal way for getting a high F1 test score for minority classes in anomaly detection problems. That is, the network might perform better even if it is not ‘confident’ enough while making a prediction; leading to another discussion about why softmax output is not a good uncertainty measure for DL models.

A Lumen Segmentation Method in Ureteroscopy Images Based on a Deep Residual U-Net Architecture

Jorge Lazo, Marzullo Aldo, Sara Moccia, Michele Catellani, Benoit Rosa, Elena De Momi, Michel De Mathelin, Francesco Calimeri

Auto-TLDR; A Deep Neural Network for Ureteroscopy with Residual Units

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Ureteroscopy is becoming the first surgical treatment option for the majority of urinary affections. This procedure is carried out using an endoscope which provides the surgeon with the visual and spatial information necessary to navigate inside the urinary tract. Having in mind the development of surgical assistance systems, that could enhance the performance of surgeon, the task of lumen segmentation is a fundamental part since this is the visual reference which marks the path that the endoscope should follow. This is something that has not been analyzed in ureteroscopy data before. However, this task presents several challenges given the image quality and the conditions itself of ureteroscopy procedures. In this paper, we study the implementation of a Deep Neural Network which exploits the advantage of residual units in an architecture based on U-Net. For the training of these networks, we analyze the use of two different color spaces: gray-scale and RGB data images. We found that training on gray-scale images gives the best results obtaining mean values of Dice Score, Precision, and Recall of 0.73, 0.58, and 0.92 respectively. The results obtained show that the use of residual U-Net could be a suitable model for further development for a computer-aided system for navigation and guidance through the urinary system.

Attack-Agnostic Adversarial Detection on Medical Data Using Explainable Machine Learning

Matthew Watson, Noura Al Moubayed

Auto-TLDR; Explainability-based Detection of Adversarial Samples on EHR and Chest X-Ray Data

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Explainable machine learning has become increasingly prevalent, especially in healthcare where explainable models are vital for ethical and trusted automated decision making. Work on the susceptibility of deep learning models to adversarial attacks has shown the ease of designing samples to mislead a model into making incorrect predictions. In this work, we propose an explainability-based method for the accurate detection of adversarial samples on two datasets with different complexity and properties: Electronic Health Record (EHR) and chest X-ray (CXR) data. On the MIMIC-III and Henan-Renmin EHR datasets, we report a detection accuracy of 77% against the Longitudinal Adversarial Attack. On the MIMIC-CXR dataset, we achieve an accuracy of 88%; significantly improving on the state of the art of adversarial detection in both datasets by over 10% in all settings. We propose an anomaly detection based method using explainability techniques to detect adversarial samples which is able to generalise to different attack methods without a need for retraining.

Automatic Semantic Segmentation of Structural Elements related to the Spinal Cord in the Lumbar Region by Using Convolutional Neural Networks

Jhon Jairo Sáenz Gamboa, Maria De La Iglesia-Vaya, Jon Ander Gómez

Auto-TLDR; Semantic Segmentation of Lumbar Spine Using Convolutional Neural Networks

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This work addresses the problem of automatically segmenting the MR images corresponding to the lumbar spine. The purpose is to detect and delimit the different structural elements like vertebrae, intervertebral discs, nerves, blood vessels, etc. This task is known as semantic segmentation. The approach proposed in this work is based on convolutional neural networks whose output is a mask where each pixel from the input image is classified into one of the possible classes. Classes were defined by radiologists and correspond to structural elements and tissues. The proposed network architectures are variants of the U-Net. Several complementary blocks were used to define the variants: spatial attention models, deep supervision and multi-kernels at input, this last block type is based on the idea of inception. Those architectures which got the best results are described in this paper, and their results are discussed. Two of the proposed architectures outperform the standard U-Net used as baseline.

Contextual Classification Using Self-Supervised Auxiliary Models for Deep Neural Networks

Sebastian Palacio, Philipp Engler, Jörn Hees, Andreas Dengel

Auto-TLDR; Self-Supervised Autogenous Learning for Deep Neural Networks

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Classification problems solved with deep neural networks (DNNs) typically rely on a closed world paradigm, and optimize over a single objective (e.g., minimization of the cross- entropy loss). This setup dismisses all kinds of supporting signals that can be used to reinforce the existence or absence of particular patterns. The increasing need for models that are interpretable by design makes the inclusion of said contextual signals a crucial necessity. To this end, we introduce the notion of Self-Supervised Autogenous Learning (SSAL). A SSAL objective is realized through one or more additional targets that are derived from the original supervised classification task, following architectural principles found in multi-task learning. SSAL branches impose low-level priors into the optimization process (e.g., grouping). The ability of using SSAL branches during inference, allow models to converge faster, focusing on a richer set of class-relevant features. We equip state-of-the-art DNNs with SSAL objectives and report consistent improvements for all of them on CIFAR100 and Imagenet. We show that SSAL models outperform similar state-of-the-art methods focused on contextual loss functions, auxiliary branches and hierarchical priors.

A Comparison of Neural Network Approaches for Melanoma Classification

Maria Frasca, Michele Nappi, Michele Risi, Genoveffa Tortora, Alessia Auriemma Citarella

Auto-TLDR; Classification of Melanoma Using Deep Neural Network Methodologies

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Melanoma is the deadliest form of skin cancer and it is diagnosed mainly visually, starting from initial clinical screening and followed by dermoscopic analysis, biopsy and histopathological examination. A dermatologist’s recognition of melanoma may be subject to errors and may take some time to diagnose it. In this regard, deep learning can be useful in the study and classification of skin cancer. In particular, by classifying images with Deep Neural Network methodologies, it is possible to obtain comparable or even superior results compared to those of dermatologists. In this paper, we propose a methodology for the classification of melanoma by adopting different deep learning techniques applied to a common dataset, composed of images from the ISIC dataset and consisting of different types of skin diseases, including melanoma on which we applied a specific pre-processing phase. In particular, a comparison of the results is performed in order to select the best effective neural network to be applied to the problem of recognition and classification of melanoma. Moreover, we also evaluate the impact of the pre- processing phase on the final classification. Different metrics such as accuracy, sensitivity, and specificity have been selected to assess the goodness of the adopted neural networks and compare them also with the manual classification of dermatologists.

Automatic Tuberculosis Detection Using Chest X-Ray Analysis with Position Enhanced Structural Information

Hermann Jepdjio Nkouanga, Szilard Vajda

Auto-TLDR; Automatic Chest X-ray Screening for Tuberculosis in Rural Population using Localized Region on Interest

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For Tuberculosis (TB) detection beside the more expensive diagnosis solutions such as culture or sputum smear analysis one could consider the automatic analysis of the chest X-ray (CXR). This could mimic the lung region reading by the radiologist and it could provide a cheap solution to analyze and diagnose pulmonary abnormalities such as TB which often co- occurs with HIV. This software based pulmonary screening can be a reliable and affordable solution for rural population in different parts of the world such as India, Africa, etc. Our fully automatic system is processing the incoming CXR image by applying image processing techniques to detect the region on interest (ROI) followed by a computationally cheap feature extraction involving edge detection using Laplacian of Gaussian which we enrich by counting the local distribution of the intensities. The choice to ”zoom in” the ROI and look for abnormalities locally is motivated by the fact that some pulmonary abnormalities are localized in specific regions of the lungs. Later on the classifiers can decide about the normal or abnormal nature of each lung X-ray. Our goal is to find a simple feature, instead of a combination of several ones, -proposed and promoted in recent years’ literature, which can properly describe the different pathological alterations in the lungs. Our experiments report results on two publicly available data collections1, namely the Shenzhen and the Montgomery collection. For performance evaluation, measures such as area under the curve (AUC), and accuracy (ACC) were considered, achieving AUC = 0.81 (ACC = 83.33%) and AUC = 0.96 (ACC = 96.35%) for the Montgomery and Schenzen collections, respectively. Several comparisons are also provided to other state- of-the-art systems reported recently in the field.

Learn to Segment Retinal Lesions and Beyond

Qijie Wei, Xirong Li, Weihong Yu, Xiao Zhang, Yongpeng Zhang, Bojie Hu, Bin Mo, Di Gong, Ning Chen, Dayong Ding, Youxin Chen

Auto-TLDR; Multi-task Lesion Segmentation and Disease Classification for Diabetic Retinopathy Grading

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Towards automated retinal screening, this paper makes an endeavor to simultaneously achieve pixel-level retinal lesion segmentation and image-level disease classification. Such a multi-task approach is crucial for accurate and clinically interpretable disease diagnosis. Prior art is insufficient due to three challenges, i.e., lesions lacking objective boundaries, clinical importance of lesions irrelevant to their size, and the lack of one-to-one correspondence between lesion and disease classes. This paper attacks the three challenges in the context of diabetic retinopathy (DR) grading. We propose Lesion-Net, a new variant of fully convolutional networks, with its expansive path re- designed to tackle the first challenge. A dual Dice loss that leverages both semantic segmentation and image classification losses is introduced to resolve the second challenge. Lastly, we build a multi-task network that employs Lesion-Net as a side- attention branch for both DR grading and result interpretation. A set of 12K fundus images is manually segmented by 45 ophthalmologists for 8 DR-related lesions, resulting in 290K manual segments in total. Extensive experiments on this large- scale dataset show that our proposed approach surpasses the prior art for multiple tasks including lesion segmentation, lesion classification and DR grading.

Progressive Adversarial Semantic Segmentation

Abdullah-Al-Zubaer Imran, Demetri Terzopoulos

Auto-TLDR; Progressive Adversarial Semantic Segmentation for End-to-End Medical Image Segmenting

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Medical image computing has advanced rapidly with the advent of deep learning techniques such as convolutional neural networks. Deep convolutional neural networks can perform exceedingly well given full supervision. However, the success of such fully-supervised models for various image analysis tasks (e.g., anatomy or lesion segmentation from medical images) is limited to the availability of massive amounts of labeled data. Given small sample sizes, such models are prohibitively data biased with large domain shift. To tackle this problem, we propose a novel end-to-end medical image segmentation model, namely Progressive Adversarial Semantic Segmentation (PASS), which can make improved segmentation predictions without requiring any domain-specific data during training time. Our extensive experimentation with 8 public diabetic retinopathy and chest X-ray datasets, confirms the effectiveness of PASS for accurate vascular and pulmonary segmentation, both for in-domain and cross-domain evaluations.

Multimodal Side-Tuning for Document Classification

Stefano Zingaro, Giuseppe Lisanti, Maurizio Gabbrielli

Auto-TLDR; Side-tuning for Multimodal Document Classification

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In this paper, we propose to exploit the side-tuning framework for multimodal document classification. Side-tuning is a methodology for network adaptation recently introduced to solve some of the problems related to previous approaches. Thanks to this technique it is actually possible to overcome model rigidity and catastrophic forgetting of transfer learning by fine-tuning. The proposed solution uses off-the-shelf deep learning architectures leveraging the side-tuning framework to combine a base model with a tandem of two side networks. We show that side-tuning can be successfully employed also when different data sources are considered, e.g. text and images in document classification. The experimental results show that this approach pushes further the limit for document classification accuracy with respect to the state of the art.

MTGAN: Mask and Texture-Driven Generative Adversarial Network for Lung Nodule Segmentation

Wei Chen, Qiuli Wang, Kun Wang, Dan Yang, Xiaohong Zhang, Chen Liu, Yucong Li

Auto-TLDR; Mask and Texture-driven Generative Adversarial Network for Lung Nodule Segmentation

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Accurate segmentation for lung nodules in lung computed tomography (CT) scans plays a key role in the early diagnosis of lung cancer. Many existing methods, especially UNet, have made significant progress in lung nodule segmentation. However, due to the complex shapes of lung nodules and the similarity of visual characteristics between nodules and lung tissues, an accurate segmentation with few false positives of lung nodules is still a challenging problem. Considering the fact that both boundary and texture information of lung nodules are important for obtaining an accurate segmentation result, we propose a novel Mask and Texture-driven Generative Adversarial Network (MTGAN) with a joint multi-scale L1 loss for lung nodule segmentation, which takes full advantages of U-Net and adversarial training. The proposed MTGAN leverages adversarial learning strategy guided by the boundary and texture information of lung nodules to generate more accurate segmentation results with lesser false positives. We validate our model with the LIDC–IDRI dataset, and experimental results show that our method achieves excellent segmentation results for a variety of lung nodules, especially for juxtapleural nodules and low-dense nodules. Without any bells and whistles, the proposed MTGAN achieves significant segmentation performance with the Dice similarity coefficient (DSC) of 85.24% on the LIDC–IDRI dataset.

Supporting Skin Lesion Diagnosis with Content-Based Image Retrieval

Stefano Allegretti, Federico Bolelli, Federico Pollastri, Sabrina Longhitano, Giovanni Pellacani, Costantino Grana

Auto-TLDR; Skin Images Retrieval Using Convolutional Neural Networks for Skin Lesion Classification and Segmentation

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Given the relevance of skin cancer, many attempts have been dedicated to the creation of automated devices that could assist both expert and beginner dermatologists towards fast and early diagnosis of skin lesions. In recent years, tasks such as skin lesion classification and segmentation have been extensively addressed with deep learning algorithms, which in some cases reach a diagnostic accuracy comparable to that of expert physicians. However, the general lack of interpretability and reliability severely hinders the ability of those approaches to actually support dermatologists in the diagnosis process. In this paper a novel skin images retrieval system is presented, which exploits features extracted by Convolutional Neural Networks to gather similar images from a publicly available dataset, in order to assist the diagnosis process of both expert and novice practitioners. In the proposed framework, Resnet-50 is initially trained for the classification of dermoscopic images; then, the feature extraction part is isolated, and an embedding network is build on top of it. The embedding learns an alternative representation, which allows to check image similarity by means of a distance measure. Experimental results reveal that the proposed method is able to select meaningful images, which can effectively boost the classification accuracy of human dermatologists.

Estimation of Abundance and Distribution of SaltMarsh Plants from Images Using Deep Learning

Jayant Parashar, Suchendra Bhandarkar, Jacob Simon, Brian Hopkinson, Steven Pennings

Auto-TLDR; CNN-based approaches to automated plant identification and localization in salt marsh images

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Recent advances in computer vision and machine learning, most notably deep convolutional neural networks (CNNs), are exploited to identify and localize various plant species in salt marsh images. Three different approaches are explored that provide estimations of abundance and spatial distribution at varying levels of granularity in terms of spatial resolution. In the coarsest-grained approach, CNNs are tasked with identifying which of six plant species are present/absent in large patches within the salt marsh images. CNNs with diverse topological properties and attention mechanisms are shown capable of providing accurate estimations with >90 % precision and recall in the case of the more abundant plant species whereas the performance declines for less common plant species. Estimation of percent cover of each plant species is performed at a finer spatial resolution, where smaller image patches are extracted and the CNNs tasked with identifying the plant species or substrate at the center of the image patch. For the percent cover estimation task, the CNNs are observed to exhibit a performance profile similar to that for the presence/absence estimation task, but with an ~ 5-10% reduction in precision and recall. Finally, fine-grained estimation of the spatial distribution of the various plant species is performed via semantic segmentation. The Deeplab-V3 semantic segmentation architecture is observed to provide very accurate estimations for abundant plant species; however,a significant degradation in performance is observed in the case of less abundant plant species and, in extreme cases, rare plant classes are seen to be ignored entirely. Overall, a clear trade-off is observed between the CNN estimation quality and the spatial resolution of the underlying estimation thereby offering guidance for ecological applications of CNN-based approaches to automated plant identification and localization in salt marsh images.

Modeling the Distribution of Normal Data in Pre-Trained Deep Features for Anomaly Detection

Oliver Rippel, Patrick Mertens, Dorit Merhof

Auto-TLDR; Deep Feature Representations for Anomaly Detection in Images

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Anomaly Detection (AD) in images is a fundamental computer vision problem and refers to identifying images and/or image substructures that deviate significantly from the norm. Popular AD algorithms commonly try to learn a model of normality from scratch using task specific datasets, but are limited to semi-supervised approaches employing mostly normal data due to the inaccessibility of anomalies on a large scale combined with the ambiguous nature of anomaly appearance. We follow an alternative approach and demonstrate that deep feature representations learned by discriminative models on large natural image datasets are well suited to describe normality and detect even subtle anomalies. Our model of normality is established by fitting a multivariate Gaussian to deep feature representations of classification networks trained on ImageNet using normal data only in a transfer learning setting. By subsequently applying the Mahalanobis distance as the anomaly score we outperform the current state of the art on the public MVTec AD dataset, achieving an Area Under the Receiver Operating Characteristic curve of 95.8 +- 1.2 % (mean +- SEM) over all 15 classes. We further investigate why the learned representations are discriminative to the AD task using Principal Component Analysis. We find that the principal components containing little variance in normal data are the ones crucial for discriminating between normal and anomalous instances. This gives a possible explanation to the often sub-par performance of AD approaches trained from scratch using normal data only. By selectively fitting a multivariate Gaussian to these most relevant components only, we are able to further reduce model complexity while retaining AD performance. We also investigate setting the working point by selecting acceptable False Positive Rate thresholds based on the multivariate Gaussian assumption.

Minority Class Oriented Active Learning for Imbalanced Datasets

Umang Aggarwal, Adrian Popescu, Celine Hudelot

Auto-TLDR; Active Learning for Imbalanced Datasets

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Active learning aims to optimize the dataset annotation process when resources are constrained. Most existing methods are designed for balanced datasets. Their practical applicability is limited by the fact that a majority of real-life datasets are actually imbalanced. Here, we introduce a new active learning method which is designed for imbalanced datasets. It favors samples likely to be in minority classes so as to reduce the imbalance of the labeled subset and create a better representation for these classes. We also compare two training schemes for active learning: (1) the one commonly deployed in deep active learning using model fine tuning for each iteration and (2) a scheme which is inspired by transfer learning and exploits generic pre-trained models and train shallow classifiers for each iteration. Evaluation is run with three imbalanced datasets. Results show that the proposed active learning method outperforms competitive baselines. Equally interesting, they also indicate that the transfer learning training scheme outperforms model fine tuning if features are transferable from the generic dataset to the unlabeled one. This last result is surprising and should encourage the community to explore the design of deep active learning methods.

A Versatile Crack Inspection Portable System Based on Classifier Ensemble and Controlled Illumination

Milind Gajanan Padalkar, Carlos Beltran-Gonzalez, Matteo Bustreo, Alessio Del Bue, Vittorio Murino

Auto-TLDR; Lighting Conditions for Crack Detection in Ceramic Tile

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This paper presents a novel setup for automatic visual inspection of cracks in ceramic tile as well as studies the effect of various classifiers and height-varying illumination conditions for this task. The intuition behind this setup is that cracks can be better visualized under specific lighting conditions than others. Our setup, which is designed for field work with constraints in its maximum dimensions, can acquire images for crack detection with multiple lighting conditions using the illumination sources placed at multiple heights. Crack detection is then performed by classifying patches extracted from the acquired images in a sliding window fashion. We study the effect of lights placed at various heights by training classifiers both on customized as well as state-of-the-art architectures and evaluate their performance both at patch-level and image-level, demonstrating the effectiveness of our setup. More importantly, ours is the first study that demonstrates how height-varying illumination conditions can affect crack detection with the use of existing state-of-the-art classifiers. We provide an insight about the illumination conditions that can help in improving crack detection in a challenging real-world industrial environment.

FastSal: A Computationally Efficient Network for Visual Saliency Prediction

Feiyan Hu, Kevin Mcguinness

Auto-TLDR; MobileNetV2: A Convolutional Neural Network for Saliency Prediction

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This paper focuses on the problem of visual saliency prediction, predicting regions of an image that tend to attract human visual attention, under a constrained computational budget. We modify and test various recent efficient convolutional neural network architectures like EfficientNet and MobileNetV2 and compare them with existing state-of-the-art saliency models such as SalGAN and DeepGaze II both in terms of standard accuracy metrics like AUC and NSS, and in terms of the computational complexity and model size. We find that MobileNetV2 makes an excellent backbone for a visual saliency model and can be effective even without a complex decoder. We also show that knowledge transfer from a more computationally expensive model like DeepGaze II can be achieved via pseudo-labelling an unlabelled dataset, and that this approach gives result on-par with many state-of-the-art algorithms with a fraction of the computational cost and model size.

Shape Consistent 2D Keypoint Estimation under Domain Shift

Levi Vasconcelos, Massimiliano Mancini, Davide Boscaini, Barbara Caputo, Elisa Ricci

Auto-TLDR; Deep Adaptation for Keypoint Prediction under Domain Shift

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Recent unsupervised domain adaptation methods based on deep architectures have shown remarkable performance not only in traditional classification tasks but also in more complex problems involving structured predictions (e.g. semantic segmentation, depth estimation). Following this trend, in this paper we present a novel deep adaptation framework for estimating keypoints under \textit{domain shift}, i.e. when the training (\textit{source}) and the test (\textit{target}) images significantly differ in terms of visual appearance. Our method seamlessly combines three different components: feature alignment, adversarial training and self-supervision. Specifically, our deep architecture leverages from domain-specific distribution alignment layers to perform target adaptation at the feature level. Furthermore, a novel loss is proposed which combines an adversarial term for ensuring aligned predictions in the output space and a geometric consistency term which guarantees coherent predictions between a target sample and its perturbed version. Our extensive experimental evaluation conducted on three publicly available benchmarks shows that our approach outperforms state-of-the-art domain adaptation methods in the 2D keypoint prediction task.

Self-Supervised Learning with Graph Neural Networks for Region of Interest Retrieval in Histopathology

Yigit Ozen, Selim Aksoy, Kemal Kosemehmetoglu, Sevgen Onder, Aysegul Uner

Auto-TLDR; Self-supervised Contrastive Learning for Deep Representation Learning of Histopathology Images

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Deep learning has achieved successful performance in representation learning and content-based retrieval of histopathology images. The commonly used setting in deep learning-based approaches is supervised training of deep neural networks for classification, and using the trained model to extract representations that are used for computing and ranking the distances between images. However, there are two remaining major challenges. First, supervised training of deep neural networks requires large amount of manually labeled data which is often limited in the medical field. Transfer learning has been used to overcome this challenge, but its success remained limited. Second, the clinical practice in histopathology necessitates working with regions of interest (ROI) of multiple diagnostic classes with arbitrary shapes and sizes. The typical solution to this problem is to aggregate the representations of fixed-sized patches cropped from these regions to obtain region-level representations. However, naive methods cannot sufficiently exploit the rich contextual information in the complex tissue structures. To tackle these two challenges, we propose a generic method that utilizes graph neural networks (GNN), combined with a self-supervised training method using a contrastive loss. GNN enables representing arbitrarily-shaped ROIs as graphs and encoding contextual information. Self-supervised contrastive learning improves quality of learned representations without requiring labeled data. The experiments using a challenging breast histopathology data set show that the proposed method achieves better performance than the state-of-the-art.

Towards Tackling Multi-Label Imbalances in Remote Sensing Imagery

Dominik Koßmann, Thorsten Wilhelm, Gernot Fink

Auto-TLDR; Class imbalance in land cover datasets using attribute encoding schemes

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Recent advances in automated image analysis have lead to an increased number of proposed datasets in remote sensing applications. This permits the successful employment of data hungry state-of-the-art deep neural networks. However, the Earth is not covered equally by semantically meaningful classes. Thus, many land cover datasets suffer from a severe class imbalance. We show that by taking appropriate measures, the performance in the minority classes can be improved by up to 30 percent without affecting the performance in the majority classes strongly. Additionally, we investigate the use of an attribute encoding scheme to represent the inherent class hierarchies commonly observed in land cover analysis.

Image Representation Learning by Transformation Regression

Xifeng Guo, Jiyuan Liu, Sihang Zhou, En Zhu, Shihao Dong

Auto-TLDR; Self-supervised Image Representation Learning using Continuous Parameter Prediction

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Self-supervised learning is a thriving research direction since it can relieve the burden of human labeling for machine learning by seeking for supervision from data instead of human annotation. Although demonstrating promising performance in various applications, we observe that the existing methods usually model the auxiliary learning tasks as classification tasks with finite discrete labels, leading to insufficient supervisory signals, which in turn restricts the representation quality. In this paper, to solve the above problem and make full use of the supervision from data, we design a regression model to predict the continuous parameters of a group of transformations, i.e., image rotation, translation, and scaling. Surprisingly, this naive modification stimulates tremendous potential from data and the resulting supervisory signal has largely improved the performance of image representation learning. Extensive experiments on four image datasets, including CIFAR10, CIFAR100, STL10, and SVHN, indicate that our proposed algorithm outperforms the state-of-the-art unsupervised learning methods by a large margin in terms of classification accuracy. Crucially, we find that with our proposed training mechanism as an initialization, the performance of the existing state-of-the-art classification deep architectures can be preferably improved.

Initialization Using Perlin Noise for Training Networks with a Limited Amount of Data

Nakamasa Inoue, Eisuke Yamagata, Hirokatsu Kataoka

Auto-TLDR; Network Initialization Using Perlin Noise for Image Classification

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We propose a novel network initialization method using Perlin noise for training image classification networks with a limited amount of data. Our main idea is to initialize the network parameters by solving an artificial noise classification problem, where the aim is to classify Perlin noise samples into their noise categories. Specifically, the proposed method consists of two steps. First, it generates Perlin noise samples with category labels defined based on noise complexity. Second, it solves a classification problem, in which network parameters are optimized to classify the generated noise samples. This method produces a reasonable set of initial weights (filters) for image classification. To the best of our knowledge, this is the first work to initialize networks by solving an artificial optimization problem without using any real-world images. Our experiments show that the proposed method outperforms conventional initialization methods on four image classification datasets.

Classify Breast Histopathology Images with Ductal Instance-Oriented Pipeline

Beibin Li, Ezgi Mercan, Sachin Mehta, Stevan Knezevich, Corey Arnold, Donald Weaver, Joann Elmore, Linda Shapiro

Auto-TLDR; DIOP: Ductal Instance-Oriented Pipeline for Diagnostic Classification

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In this study, we propose the Ductal Instance-Oriented Pipeline (DIOP) that contains a duct-level instance segmentation model, a tissue-level semantic segmentation model, and three-levels of features for diagnostic classification. Based on recent advancements in instance segmentation and the Mask R-CNN model, our duct-level segmenter tries to identify each ductal individual inside a microscopic image; then, it extracts tissue-level information from the identified ductal instances. Leveraging three levels of information obtained from these ductal instances and also the histopathology image, the proposed DIOP outperforms previous approaches (both feature-based and CNN-based) in all diagnostic tasks; for the four-way classification task, the DIOP achieves comparable performance to general pathologists in this unique dataset. The proposed DIOP only takes a few seconds to run in the inference time, which could be used interactively on most modern computers. More clinical explorations are needed to study the robustness and generalizability of this system in the future.

Uncertainty-Aware Data Augmentation for Food Recognition

Eduardo Aguilar, Bhalaji Nagarajan, Rupali Khatun, Marc Bolaños, Petia Radeva

Auto-TLDR; Data Augmentation for Food Recognition Using Epistemic Uncertainty

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Food recognition has recently attracted attention of many researchers. However, high food ambiguity, inter-class variability and intra-class similarity define a real challenge for the Deep learning and Computer Vision algorithms. In order to improve their performance, it is necessary to better understand what the model learns and, from this, to determine the type of data that should be additionally included for being the most beneficial to the training procedure. In this paper, we propose a new data augmentation strategy that estimates and uses the epistemic uncertainty to guide the model training. The method follows an active learning framework, where the new synthetic images are generated from the hard to classify real ones present in the training data based on the epistemic uncertainty. Hence, it allows the food recognition algorithm to focus on difficult images in order to learn their discriminatives features. On the other hand, avoiding data generation from images that do not contribute to the recognition makes it faster and more efficient. We show that the proposed method allows to improve food recognition and provides a better trade-off between micro- and macro-recall measures.

A Benchmark Dataset for Segmenting Liver, Vasculature and Lesions from Large-Scale Computed Tomography Data

Bo Wang, Zhengqing Xu, Wei Xu, Qingsen Yan, Liang Zhang, Zheng You

Auto-TLDR; The Biggest Treatment-Oriented Liver Cancer Dataset for Segmentation

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How to build a high-performance liver-related computer assisted diagnosis system is an open question of great interest. However, the performance of the state-of-art algorithm is always limited by the amount of data and quality of the label. To address this problem, we propose the biggest treatment-oriented liver cancer dataset for liver surgery and treatment planning. This dataset provides 216 cases (totally about 268K frames) scanned images in contrast-enhanced computed tomography (CT). We labeled all the CT images with the liver, liver vasculature and liver tumor segmentation ground truth for train and tune segmentation algorithms in advance. Based on that, we evaluate several recent and state-of-the-art segmentation algorithms, including 7 deep learning methods, on CT sequences. All results are compared to reference segmentations five error metrics that highlight different aspects of segmentation accuracy. In general, compared with previous datasets, our dataset is really a challenging dataset. To our knowledge, the proposed dataset and benchmark allow for the first time systematic exploration of such issues, and will be made available to allow for further research in this field.

Stage-Wise Neural Architecture Search

Artur Jordão, Fernando Akio Yamada, Maiko Lie, William Schwartz

Auto-TLDR; Efficient Neural Architecture Search for Deep Convolutional Networks

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Modern convolutional networks such as ResNet and NASNet have achieved state-of-the-art results in many computer vision applications. These architectures consist of stages, which are sets of layers that operate on representations in the same resolution. It has been demonstrated that increasing the number of layers in each stage improves the prediction ability of the network. However, the resulting architecture becomes computationally expensive in terms of floating point operations, memory requirements and inference time. Thus, significant human effort is necessary to evaluate different trade-offs between depth and performance. To handle this problem, recent works have proposed to automatically design high-performance architectures, mainly by means of neural architecture search (NAS). Current NAS strategies analyze a large set of possible candidate architectures and, hence, require vast computational resources and take many GPUs days. Motivated by this, we propose a NAS approach to efficiently design accurate and low-cost convolutional architectures and demonstrate that an efficient strategy for designing these architectures is to learn the depth stage-by-stage. For this purpose, our approach increases depth incrementally in each stage taking into account its importance, such that stages with low importance are kept shallow while stages with high importance become deeper. We conduct experiments on the CIFAR and different versions of ImageNet datasets, where we show that architectures discovered by our approach achieve better accuracy and efficiency than human-designed architectures. Additionally, we show that architectures discovered on CIFAR-10 can be successfully transferred to large datasets. Compared to previous NAS approaches, our method is substantially more efficient, as it evaluates one order of magnitude fewer models and yields architectures on par with the state-of-the-art.

Polarimetric Image Augmentation

Marc Blanchon, Fabrice Meriaudeau, Olivier Morel, Ralph Seulin, Desire Sidibe

Auto-TLDR; Polarimetric Augmentation for Deep Learning in Robotics Applications

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This paper deals with new augmentation methods for an unconventional imaging modality sensitive to the physics of the observed scene called polarimetry. In nature, polarized light is obtained by reﬂection or scattering. Robotics applications in urban environments are subject to many obstacles that can be specular and therefore provide polarized light. These areas are prone to segmentation errors using standard modalities but could be solved using information carried by the polarized light. Deep Convolutional Neural Networks (DCNNs) have shown excellent segmentation results, but require a signiﬁcant amount of data to achieve best performances. The lack of data is usually overcomed by using augmentation methods. However, unlike RGB images, polarization images are not only scalar (intensity) images and standard augmentation techniques cannot be applied straightforwardly. We propose enhancing deep learning models through a regularized augmentation procedure applied to polarimetric data in order to characterize scenes more effectively under challenging conditions. We subsequently observe an average of 18.1% improvement in IoU between not augmented and regularized training procedures on real world data.

From Human Pose to On-Body Devices for Human-Activity Recognition

Fernando Moya Rueda, Gernot Fink

Auto-TLDR; Transfer Learning from Human Pose Estimation for Human Activity Recognition using Inertial Measurements from On-Body Devices

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Human Activity Recognition (HAR), using inertial measurements from on-body devices, has not seen a great advantage from deep architectures. This is mainly due to the lack of annotated data, diversity of on-body device configurations, the class-unbalance problem, and non-standard human activity definitions. Approaches for improving the performance of such architectures, e.g., transfer learning, are therefore difficult to apply. This paper introduces a method for transfer learning from human-pose estimations as a source for improving HAR using inertial measurements obtained from on-body devices. We propose to fine-tune deep architectures, trained using sequences of human poses from a large dataset and their derivatives, for solving HAR on inertial measurements from on-body devices. Derivatives of human poses will be considered as a sort of synthetic data for HAR. We deploy two different temporal-convolutional architectures as classifiers. An evaluation of the method is carried out on three benchmark datasets improving the classification performance.