Extended Depth of Field Preserving Color Fidelity for Automated Digital Cytology

Alexandre Bouyssoux, Riadh Fezzani, Jean-Christophe Olivo-Marin

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Auto-TLDR; Multi-Channel Extended Depth of Field for Digital cytology based on the stationary wavelet transform

Poster

This paper presents a multi-channel Extended Depth of Field (EDF) method for digital cytology based on the stationary wavelet transform. With a coefficient selection rule adapted to a precise color recovery, a sharp image can be reconstructed even on images with transparent overlapping cells. The precision and the color fidelity of the proposed method is analyzed. Moreover, an experiment demonstrating the necessity of volume analysis in cytology to achieve precise segmentation on cell clumps is conducted, and the importance of color fidelity in this context is asserted. The proposed method was tested on pap-stained urothelial cells and gray-scale cervical cells with important overlapping.

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Auto-TLDR; Independent Single Channel U-Net Fusion for Multi-focus Microscopy Images

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Near-Infrared Depth-Independent Image Dehazing using Haar Wavelets

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Auto-TLDR; A fusion algorithm for haze removal using Haar wavelets

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Cost Volume Refinement for Depth Prediction

João L. Cardoso, Nuno Goncalves, Michael Wimmer

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Auto-TLDR; Refining the Cost Volume for Depth Prediction from Light Field Cameras

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MedZip: 3D Medical Images Lossless Compressor Using Recurrent Neural Network (LSTM)

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Auto-TLDR; Recurrent Neural Network for Lossless Medical Image Compression using Long Short-Term Memory

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A Multi-Focus Image Fusion Method Based on Fractal Dimension and Guided Filtering

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Auto-TLDR; Fractal Dimension-based Multi-focus Image Fusion with Guide Filtering

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Weakly Supervised Geodesic Segmentation of Egyptian Mummy CT Scans

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Auto-TLDR; A Weakly Supervised and Efficient Interactive Segmentation of Ancient Egyptian Mummies CT Scans Using Geodesic Distance Measure and GrabCut

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A Dual-Branch Network for Infrared and Visible Image Fusion

Yu Fu, Xiaojun Wu

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Auto-TLDR; Image Fusion Using Autoencoder for Deep Learning

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Auto-TLDR; Semantic Segmentation of Lumbar Spine Using Convolutional Neural Networks

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Auto-TLDR; Recovering 3D Head Geometry from a Single Image using Deep Learning and Geometric Techniques

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Auto-TLDR; Image Stitching for True Geometrical Layout Recovery in Nanoscale Dimension

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A Benchmark Dataset for Segmenting Liver, Vasculature and Lesions from Large-Scale Computed Tomography Data

Bo Wang, Zhengqing Xu, Wei Xu, Qingsen Yan, Liang Zhang, Zheng You

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Auto-TLDR; The Biggest Treatment-Oriented Liver Cancer Dataset for Segmentation

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Improved anomaly detection by training an autoencoder with skip connections on images corrupted with Stain-shaped noise

Anne-Sophie Collin, Christophe De Vleeschouwer

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Auto-TLDR; Autoencoder with Skip Connections for Anomaly Detection

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In industrial vision, the anomaly detection problem can be addressed with an autoencoder trained to map an arbitrary image, i.e. with or without any defect, to a clean image, i.e. without any defect. In this approach, anomaly detection relies conventionally on the reconstruction residual or, alternatively, on the reconstruction uncertainty. To improve the sharpness of the reconstruction, we consider an autoencoder architecture with skip connections. In the common scenario where only clean images are available for training, we propose to corrupt them with a synthetic noise model to prevent the convergence of the network towards the identity mapping, and introduce an original Stain noise model for that purpose. We show that this model favors the reconstruction of clean images from arbitrary real-world images, regardless of the actual defects appearance. In addition to demonstrating the relevance of our approach, our validation provides the first consistent assessment of reconstruction-based methods, by comparing their performance over the MVTec AD dataset [ref.], both for pixel- and image-wise anomaly detection.

Few Shot Learning Framework to Reduce Inter-Observer Variability in Medical Images

Sohini Roychowdhury

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Auto-TLDR; Few-Shot Learning for Quality Image Annotation

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Most computer aided pathology detection systems rely on large volumes of quality annotated data to aid diagnostics and follow up procedures. However, quality assuring large volumes of annotated medical image data can be subjective and expensive. In this work we present a novel standardization framework that implements three few-shot learning (FSL) models that can be iteratively trained by atmost 5 images per 3D stack to generate multiple regional proposals (RPs) per test image. These FSL models include a novel parallel echo state network framework and an augmented U-net model. Additionally, we propose a novel target label selection algorithm (TLSA) that measures relative agreeability between RPs and the manually annotated target labels to detect the ``best" quality annotation per image. Using the FSL models, our system achieves 0.28-0.64 Dice coefficient across vendor image stacks for intra-retinal cyst segmentation. Additionally, the TLSA is capable of correctly classifying high quality target labels from their noisy counterparts with 70-97% accuracy. The proposed system significantly automates high quality annotation selection on an image level while minimizing manual quality checking to 12-28% of the images only. Thus, the proposed framework is flexible to extensions for quality image annotation curation of other image stacks as well.

Deep Learning-Based Type Identification of Volumetric MRI Sequences

Jean Pablo De Mello, Thiago Paixão, Rodrigo Berriel, Mauricio Reyes, Alberto F. De Souza, Claudine Badue, Thiago Oliveira-Santos

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Auto-TLDR; Deep Learning for Brain MRI Sequences Identification Using Convolutional Neural Network

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The analysis of Magnetic Resonance Imaging (MRI) sequences enables clinical professionals to monitor the progression of a brain tumor. As the interest for automatizing brain volume MRI analysis increases, it becomes convenient to have each sequence well identified. However, the unstandardized naming of MRI sequences make their identification difficult for automated systems, as well as make it difficult for researches to generate or use datasets for machine learning research. In face of that, we propose a system for identifying types of brain MRI sequences based on deep learning. By training a Convolutional Neural Network (CNN) based on 18-layer ResNet architecture, our system is able to classify a volumetric brain MRI as a T1, T1c, T2 or FLAIR sequence, or whether it does not belong to any of these classes. The network was trained with both pre-processed (BraTS dataset) and non-pre-processed (TCGA-GBM dataset) images with diverse acquisition protocols, requiring only a few layers of the volume for training. Our system is able to classify among sequence types with an accuracy of 96.27%.

DR2S: Deep Regression with Region Selection for Camera Quality Evaluation

Marcelin Tworski, Stéphane Lathuiliere, Salim Belkarfa, Attilio Fiandrotti, Marco Cagnazzo

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Auto-TLDR; Texture Quality Estimation Using Deep Learning

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In this work, we tackle the problem of estimating a camera capability to preserve fine texture details at a given lighting condition. Importantly, our texture preservation measurement should coincide with human perception. Consequently, we formulate our problem as a regression one and we introduce a deep convolutional network to estimate texture quality score. At training time, we use ground-truth quality scores provided by expert human annotators in order to obtain a subjective quality measure. In addition, we propose a region selection method to identify the image regions that are better suited at measuring perceptual quality. Finally, our experimental evaluation shows that our learning-based approach outperforms existing methods and that our region selection algorithm consistently improves the quality estimation.

Video Reconstruction by Spatio-Temporal Fusion of Blurred-Coded Image Pair

Anupama S, Prasan Shedligeri, Abhishek Pal, Kaushik Mitr

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Auto-TLDR; Recovering Video from Motion-Blurred and Coded Exposure Images Using Deep Learning

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Learning-based methods have enabled the recovery of a video sequence from a single motion-blurred image or a single coded exposure image. Recovering video from a single motion-blurred image is a very ill-posed problem and the recovered video usually has many artifacts. In addition to this, the direction of motion is lost and it results in motion ambiguity. However, it has the advantage of fully preserving the information in the static parts of the scene. The traditional coded exposure framework is better-posed but it only samples a fraction of the space-time volume, which is at best $50\%$ of the space-time volume. Here, we propose to use the complementary information present in the fully-exposed (blurred) image along with the coded exposure image to recover a high fidelity video without any motion ambiguity. Our framework consists of a shared encoder followed by an attention module to selectively combine the spatial information from the fully-exposed image with the temporal information from the coded image, which is then super-resolved to recover a non-ambiguous high-quality video. The input to our algorithm is a fully-exposed and coded image pair. Such an acquisition system already exists in the form of a Coded-two-bucket (C2B) camera. We demonstrate that our proposed deep learning approach using blurred-coded image pair produces much better results than those from just a blurred image or just a coded image.

Learning to Segment Clustered Amoeboid Cells from Brightfield Microscopy Via Multi-Task Learning with Adaptive Weight Selection

Rituparna Sarkar, Suvadip Mukherjee, Elisabeth Labruyere, Jean-Christophe Olivo-Marin

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Auto-TLDR; Supervised Cell Segmentation from Microscopy Images using Multi-task Learning in a Multi-Task Learning Paradigm

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Detecting and segmenting individual cells from microscopy images is critical to various life science applications. Traditional cell segmentation tools are often ill-suited for applications in brightfield microscopy due to poor contrast and intensity heterogeneity, and only a small subset are applicable to segment cells in a cluster. In this regard, we introduce a novel supervised technique for cell segmentation in a multi-task learning paradigm. A combination of a multi-task loss, based on the region and cell boundary detection, is employed for an improved prediction efficiency of the network. The learning problem is posed in a novel min-max framework which enables adaptive estimation of the hyper-parameters in an automatic fashion. The region and cell boundary predictions are combined via morphological operations and active contour model to segment individual cells. The proposed methodology is particularly suited to segment touching cells from brightfield microscopy images without manual interventions. Quantitatively, we observe an overall Dice score of 0.93 on the validation set, which is an improvement of over 15.9% on a recent unsupervised method, and outperforms the popular supervised U-net algorithm by at least 5.8% on average.

Polarimetric Image Augmentation

Marc Blanchon, Fabrice Meriaudeau, Olivier Morel, Ralph Seulin, Desire Sidibe

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Auto-TLDR; Polarimetric Augmentation for Deep Learning in Robotics Applications

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This paper deals with new augmentation methods for an unconventional imaging modality sensitive to the physics of the observed scene called polarimetry. In nature, polarized light is obtained by reflection or scattering. Robotics applications in urban environments are subject to many obstacles that can be specular and therefore provide polarized light. These areas are prone to segmentation errors using standard modalities but could be solved using information carried by the polarized light. Deep Convolutional Neural Networks (DCNNs) have shown excellent segmentation results, but require a significant amount of data to achieve best performances. The lack of data is usually overcomed by using augmentation methods. However, unlike RGB images, polarization images are not only scalar (intensity) images and standard augmentation techniques cannot be applied straightforwardly. We propose enhancing deep learning models through a regularized augmentation procedure applied to polarimetric data in order to characterize scenes more effectively under challenging conditions. We subsequently observe an average of 18.1% improvement in IoU between not augmented and regularized training procedures on real world data.

Semi-Supervised Deep Learning Techniques for Spectrum Reconstruction

Adriano Simonetto, Vincent Parret, Alexander Gatto, Piergiorgio Sartor, Pietro Zanuttigh

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Auto-TLDR; hyperspectral data estimation from RGB data using semi-supervised learning

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State-of-the-art approaches for the estimation of hyperspectral images (HSI) from RGB data are mostly based on deep learning techniques but due to the lack of training data their performances are limited to uncommon scenarios where a large hyperspectral database is available. In this work we present a family of novel deep learning schemes for hyperspectral data estimation able to work when the hyperspectral information at our disposal is limited. Firstly, we introduce a learning scheme exploiting a physical model based on the backward mapping to the RGB space and total variation regularization that can be trained with a limited amount of HSI images. Then, we propose a novel semi-supervised learning scheme able to work even with just a few pixels labeled with hyperspectral information. Finally, we show that the approach can be extended to a transfer learning scenario. The proposed techniques allow to reach impressive performances while requiring only some HSI images or just a few pixels for the training.

Vesselness Filters: A Survey with Benchmarks Applied to Liver Imaging

Jonas Lamy, Odyssée Merveille, Bertrand Kerautret, Nicolas Passat, Antoine Vacavant

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Auto-TLDR; Comparison of Vessel Enhancement Filters for Liver Vascular Network Segmentation

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Edge-Guided CNN for Denoising Images from Portable Ultrasound Devices

Yingnan Ma, Fei Yang, Anup Basu

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Auto-TLDR; Edge-Guided Convolutional Neural Network for Portable Ultrasound Images

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Fast Region-Adaptive Defogging and Enhancement for Outdoor Images Containing Sky

Zhan Li, Xiaopeng Zheng, Bir Bhanu, Shun Long, Qingfeng Zhang, Zhenghao Huang

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Auto-TLDR; Image defogging and enhancement of hazy outdoor scenes using region-adaptive segmentation and region-ratio-based adaptive Gamma correction

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Inclement weather, haze, and fog severely decrease the performance of outdoor imaging systems. Due to a large range of the depth-of-field, most image dehazing or enhancement methods suffer from color distortions and halo artifacts when applied to real-world hazy outdoor scenes, especially those with the sky. To effectively recover details in both distant and nearby regions as well as to preserve color fidelity of the sky, in this study, we propose a novel image defogging and enhancement approach based on a replaceable plug-in segmentation module and region-adaptive processing. First, regions of the grayish sky, pure white objects, and other parts are separated. Several segmentation methods are studied, including an efficient threshold-based one used for this work. Second, a luminance-inverted multi-scale Retinex with color restoration (MSRCR) and region-ratio-based adaptive Gamma correction are applied to non-grayish and non-white areas. Finally, the enhanced regions are stitched seamlessly by using a mean-filtered region mask. The proposed method is efficient in defogging natural outdoor scenes and requires no training data or prior knowledge. Extensive experiments show that the proposed approach not only outperforms several state-of-the-art defogging methods in terms of both visibility and color fidelity, but also provides enhanced outputs with fewer artifacts and halos, particularly in sky regions.

A Deep Learning Approach for the Segmentation of Myocardial Diseases

Khawala Brahim, Abdull Qayyum, Alain Lalande, Arnaud Boucher, Anis Sakly, Fabrice Meriaudeau

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Auto-TLDR; Segmentation of Myocardium Infarction Using Late GADEMRI and SegU-Net

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Cardiac left ventricular (LV) segmentation is of paramount essential step for both diagnosis and treatment of cardiac pathologies such as ischemia, myocardial infarction, arrhythmia and myocarditis. However, this segmentation is challenging due to high variability across patients and the potential lack of contrast between structures. In this work, we propose and evaluate a (2.5D) SegU-Net model based on the fusion of two deep learning techniques (U-Net and Seg-Net) for automated LGEMRI (Late gadolinium enhanced magnetic resonance imaging) myocardial disease (infarct core and no reflow region) quantification in a new multifield expert annotated dataset. Given that the scar tissue represents a small part of the whole MRI slices, we focused on myocardium area. Segmentation results show that this preprocessing step facilitate the learning procedure. In order to solve the class imbalance problem, we propose to apply the Jaccard loss and the Focal Loss as optimization loss function and to integrate a class weights strategy into the objective function. Late combination has been used to merge the output of the best trained models on a different set of hyperparameters. The final network segmentation performances will be useful for future comparison of new method to the current related work for this task. A total number of 2237 of slices (320 cases) were used for training/validation and 210 slices (35 cases) were used for testing. Experiments over our proposed dataset, using several evaluation metrics such Jaccard distance (IOU), Accuracy and Dice similarity coefficient (DSC), demonstrate efficiency performance in quantifying different zones of myocardium infarction across various patients. As compared to the second intra-observer study, our testing results showed that the SegUNet prediction model leads to these average dice coefficients over all segmented tissue classes, respectively : 'Background': 0.99999, 'Myocardium': 0.99434, 'Infarctus': 0.95587, 'Noreflow': 0.78187.

Segmentation of Axillary and Supraclavicular Tumoral Lymph Nodes in PET/CT: A Hybrid CNN/Component-Tree Approach

Diana Lucia Farfan Cabrera, Nicolas Gogin, David Morland, Benoît Naegel, Dimitri Papathanassiou, Nicolas Passat

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Auto-TLDR; Coupling Convolutional Neural Networks and Component-Trees for Lymph node Segmentation from PET/CT Images

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The analysis of axillary and supraclavicular lymph nodes is a primary prognostic factor for the staging of breast cancer. However, due to the size of lymph nodes and the low resolution of PET data, their segmentation is challenging. We investigate the relevance of considering axillary and supraclavicular lymph node segmentation from PET/CT images by coupling Convolutional Neural Networks (CNNs) and Component-Trees (C-Trees). Building upon the U-Net architecture, we propose a framework that couples a multi-modal U-Net fed with PET and CT, coupled with a hierarchical model obtained from the PET that provides additional high-level region-based features as input channels. Our working hypotheses are twofold. First, we take advantage of both anatomical information from CT for detecting the nodes, and from functional information from PET for detecting the pathological ones. Second, we consider region-based attributes extracted from C-Tree analysis of 3D PET/CT images to improve the CNN segmentation. We carried out experiments on a dataset of 240 pathological lymph nodes from 52 patients scans, and compared our outputs with human expert-defined ground-truth, leading to promising results.

Extending Single Beam Lidar to Full Resolution by Fusing with Single Image Depth Estimation

Yawen Lu, Yuxing Wang, Devarth Parikh, Guoyu Lu

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Auto-TLDR; Self-supervised LIDAR for Low-Cost Depth Estimation

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Depth estimation is playing an important role in indoor and outdoor scene understanding, autonomous driving, augmented reality and many other tasks. Vehicles and robotics are able to use active illumination sensors such as LIDAR to receive high precision depth estimation. However, high-resolution Lidars are usually too expensive, which limits its massive production on various applications. Though single beam LIDAR enjoys the benefits of low cost, one beam depth sensing is not usually sufficient to perceive the surrounding environment in many scenarios. In this paper, we propose a learning-based framework to explore to replicate similar or even higher performance as costly LIDARs with our designed self-supervised network and a low-cost single-beam LIDAR. After the accurate calibration with a visible camera, the single beam LIDAR can adjust the scale uncertainty of the depth map estimated by the visible camera. The adjusted depth map enjoys the benefits of high resolution and sensing accuracy as high beam LIDAR and maintains low-cost as single beam LIDAR. Thus we can achieve similar sensing effect of high beam LIDAR with more than a 50-100 times cheaper price (e.g., \$80000 Velodyne HDL-64E LIDAR v.s. \$1000 SICK TIM-781 2D LIDAR and normal camera). The proposed approach is verified on our collected dataset and public dataset with superior depth-sensing performance.

Fast and Efficient Neural Network for Light Field Disparity Estimation

Dizhi Ma, Andrew Lumsdaine

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Auto-TLDR; Improving Efficient Light Field Disparity Estimation Using Deep Neural Networks

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As with many imaging tasks, disparity estimation for light fields seems to be well-matched to machine learning approaches. Neural network-based methods can achieve an overall bad pixel rate as low as four percent on the 4D light field benchmark dataset,continued effort to improve accuracy is resulting in diminishing returns. On the other hand, due to the growing importance of mobile and embedded devices, improving the efficiency is emerging as an important problem. In this paper, we improve the efficiency of existing neural net approaches for light field disparity estimation by introducing efficient network blocks, pruning redundant sections of the network and downsampling the resolution of feature vector. To improve performance, we also propose densely sampled epipolar image plane volumes as input. Experiment results show that our approach can achieve similar results compared with state-of-the-art methods while using only one-tenth runtime.

A Heuristic-Based Decision Tree for Connected Components Labeling of 3D Volumes

Maximilian Söchting, Stefano Allegretti, Federico Bolelli, Costantino Grana

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Auto-TLDR; Entropy Partitioning Decision Tree for Connected Components Labeling

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Connected Components Labeling represents a fundamental step for many Computer Vision and Image Processing pipelines. Since the first appearance of the task in the sixties, many algorithmic solutions to optimize the computational load needed to label an image have been proposed. Among them, block-based scan approaches and decision trees revealed to be some of the most valuable strategies. However, due to the cost of the manual construction of optimal decision trees and the computational limitations of automatic strategies employed in the past, the application of blocks and decision trees has been restricted to small masks, and thus to 2D algorithms. With this paper we present a novel heuristic algorithm based on decision tree learning methodology, called Entropy Partitioning Decision Tree (EPDT). It allows to compute near-optimal decision trees for large scan masks. Experimental results demonstrate that algorithms based on the generated decision trees outperform state-of-the-art competitors.

2D Discrete Mirror Transform for Image Non-Linear Approximation

Alessandro Gnutti, Fabrizio Guerrini, Riccardo Leonardi

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Auto-TLDR; Discrete Mirror Transform (DMT)

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In this paper, a new 2D transform named Discrete Mirror Transform (DMT) is presented. The DMT is computed by decomposing a signal into its even and odd parts around an optimal location in a given direction so that the signal energy is maximally split between the two components. After minimizing the information required to regenerate the original signal by removing redundant structures, the process is iterated leading the signal energy to distribute into a continuously smaller set of coefficients. The DMT can be displayed as a binary tree, where each node represents the single (even or odd) signal derived from the decomposition in the previous level. An optimized version of the DMT (ODMT) is also introduced, by exploiting the possibility to choose different directions at which performing the decomposition. Experimental simulations have been carried out in order to test the sparsity properties of the DMT and ODMT when applied on images: referring to both transforms, the results show a superior performance with respect to the popular Discrete Cosine Transform (DCT) and Discrete Wavelet Transform (DWT) in terms of non-linear approximation.

P2D: A Self-Supervised Method for Depth Estimation from Polarimetry

Marc Blanchon, Desire Sidibe, Olivier Morel, Ralph Seulin, Daniel Braun, Fabrice Meriaudeau

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Auto-TLDR; Polarimetric Regularization for Monocular Depth Estimation

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Monocular depth estimation is a recurring subject in the field of computer vision. Its ability to describe scenes via a depth map while reducing the constraints related to the formulation of perspective geometry tends to favor its use. However, despite the constant improvement of algorithms, most methods exploit only colorimetric information. Consequently, robustness to events to which the modality is not sensitive to, like specularity or transparency, is neglected. In response to this phenomenon, we propose using polarimetry as an input for a self-supervised monodepth network. Therefore, we propose exploiting polarization cues to encourage accurate reconstruction of scenes. Furthermore, we include a term of polarimetric regularization to state-of-the-art method to take specific advantage of the data. Our method is evaluated both qualitatively and quantitatively demonstrating that the contribution of this new information as well as an enhanced loss function improves depth estimation results, especially for specular areas.

D3Net: Joint Demosaicking, Deblurring and Deringing

Tomas Kerepecky, Filip Sroubek

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Auto-TLDR; Joint demosaicking deblurring and deringing network with light-weight architecture inspired by the alternating direction method of multipliers

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Images acquired with standard digital cameras have Bayer patterns and suffer from lens blur. A demosaicking step is implemented in every digital camera, yet blur often remains unattended due to computational cost and instability of deblurring algorithms. Linear methods, which are computationally less demanding, produce ringing artifacts in deblurred images. Complex non-linear deblurring methods avoid artifacts, however their complexity imply offline application after camera demosaicking, which leads to sub-optimal performance. In this work, we propose a joint demosaicking deblurring and deringing network with a light-weight architecture inspired by the alternating direction method of multipliers. The proposed network has a transparent and clear interpretation compared to other black-box data driven approaches. We experimentally validate its superiority over state-of-the-art demosaicking methods with offline deblurring.

EdgeNet: Semantic Scene Completion from a Single RGB-D Image

Aloisio Dourado, Teofilo De Campos, Adrian Hilton, Hansung Kim

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Auto-TLDR; Semantic Scene Completion using 3D Depth and RGB Information

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Semantic scene completion is the task of predicting a complete 3D representation of volumetric occupancy with corresponding semantic labels for a scene from a single point of view. In this paper, we present EdgeNet, a new end-to-end neural network architecture that fuses information from depth and RGB, explicitly representing RGB edges in 3D space. Previous works on this task used either depth-only or depth with colour by projecting 2D semantic labels generated by a 2D segmentation network into the 3D volume, requiring a two step training process. Our EdgeNet representation encodes colour information in 3D space using edge detection and flipped truncated signed distance, which improves semantic completion scores especially in hard to detect classes. We achieved state-of-the-art scores on both synthetic and real datasets with a simpler and a more computationally efficient training pipeline than competing approaches.

Planar 3D Transfer Learning for End to End Unimodal MRI Unbalanced Data Segmentation

Martin Kolarik, Radim Burget, Carlos M. Travieso-Gonzalez, Jan Kocica

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Auto-TLDR; Planar 3D Res-U-Net Network for Unbalanced 3D Image Segmentation using Fluid Attenuation Inversion Recover

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We present a novel approach of 2D to 3D transfer learning based on mapping pre-trained 2D convolutional neural network weights into planar 3D kernels. The method is validated by proposed planar 3D res-u-net network with encoder transferred from the 2D VGG-16 which is applied for a single-stage unbalanced 3D image data segmentation. In particular, we evaluate the method on the MICCAI 2016 MS lesion segmentation challenge dataset utilizing solely Fluid Attenuation Inversion Recover (FLAIR) sequence without brain extraction for training and inference to simulate real medical praxis. The planar 3D res-u-net network performed the best both in sensitivity and Dice score amongst end to end methods processing raw MRI scans and achieved comparable Dice score to a state-of-the-art unimodal not end to end approach. Complete source code was released under the open-source license and this paper is in compliance with the Machine learning Reproducibility Checklist. By implementing practical transfer learning for 3D data representation we were able to successfully segment heavily unbalanced data without selective sampling and achieved more reliable results using less training data in single modality. From medical perspective, the unimodal approach gives an advantage in real praxis as it does not require co-registration nor additional scanning time during examination. Although modern medical imaging methods capture high resolution 3D anatomy scans suitable for computer aided detection system processing, deployment of automatic systems for interpretation of radiology imaging is still rather theoretical in many medical areas. Our work aims to bridge the gap offering solution for partial research questions.

CSpA-DN: Channel and Spatial Attention Dense Network for Fusing PET and MRI Images

Bicao Li, Zhoufeng Liu, Shan Gao, Jenq-Neng Hwang, Jun Sun, Zongmin Wang

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Auto-TLDR; CSpA-DN: Unsupervised Fusion of PET and MR Images with Channel and Spatial Attention

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In this paper, we propose a novel unsupervised fusion framework based on a dense network with channel and spatial attention (CSpA-DN) for PET and MR images. In our approach, an encoder composed of the densely connected neural network is constructed to extract features from source images, and a decoder network is leveraged to yield the fused image from these features. Simultaneously, a self-attention mechanism is introduced in the encoder and decoder to further integrate local features along with their global dependencies adaptively. The extracted feature of each spatial position is synthesized by a weighted summation of those features at the same row and column with this position via a spatial attention module. Meanwhile, the interdependent relationship of all feature maps is integrated by a channel attention module. The summation of the outputs of these two attention modules is fed into the decoder and the fused image is generated. Experimental results illustrate the superiorities of our proposed CSpA-DN model compared with state-of-the-art methods in PET and MR images fusion according to both visual perception and objective assessment.

A Comparison of Neural Network Approaches for Melanoma Classification

Maria Frasca, Michele Nappi, Michele Risi, Genoveffa Tortora, Alessia Auriemma Citarella

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Auto-TLDR; Classification of Melanoma Using Deep Neural Network Methodologies

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Melanoma is the deadliest form of skin cancer and it is diagnosed mainly visually, starting from initial clinical screening and followed by dermoscopic analysis, biopsy and histopathological examination. A dermatologist’s recognition of melanoma may be subject to errors and may take some time to diagnose it. In this regard, deep learning can be useful in the study and classification of skin cancer. In particular, by classifying images with Deep Neural Network methodologies, it is possible to obtain comparable or even superior results compared to those of dermatologists. In this paper, we propose a methodology for the classification of melanoma by adopting different deep learning techniques applied to a common dataset, composed of images from the ISIC dataset and consisting of different types of skin diseases, including melanoma on which we applied a specific pre-processing phase. In particular, a comparison of the results is performed in order to select the best effective neural network to be applied to the problem of recognition and classification of melanoma. Moreover, we also evaluate the impact of the pre- processing phase on the final classification. Different metrics such as accuracy, sensitivity, and specificity have been selected to assess the goodness of the adopted neural networks and compare them also with the manual classification of dermatologists.

Inferring Functional Properties from Fluid Dynamics Features

Andrea Schillaci, Maurizio Quadrio, Carlotta Pipolo, Marcello Restelli, Giacomo Boracchi

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Auto-TLDR; Exploiting Convective Properties of Computational Fluid Dynamics for Medical Diagnosis

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In a wide range of applied problems involving fluid flows, Computational Fluid Dynamics (CFD) provides detailed quantitative information on the flow field, at various levels of fidelity and computational cost. However, CFD alone cannot predict high-level functional properties of the system that are not easily obtained from the equations of fluid motion. In this work, we present a data-driven framework to extract additional information, such as medical diagnostic output, from CFD solutions. The task is made difficult by the huge data dimensionality of CFD, together with the limited amount of training data implied by its high computational cost. By pursuing a traditional ML pipeline of pre-processing, feature extraction, and model training, we demonstrate that informative features can be extracted from CFD data. Two experiments, pertaining to different application domains, support the claim that the convective properties implicit into a CFD solution can be leveraged to retrieve functional information for which an analytical definition is missing. Despite the preliminary nature of our study and the relative simplicity of both the geometrical and CFD models, for the first time we demonstrate that the combination of ML and CFD can diagnose a complex system in terms of high-level functional information.

Phase Retrieval Using Conditional Generative Adversarial Networks

Tobias Uelwer, Alexander Oberstraß, Stefan Harmeling

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Auto-TLDR; Conditional Generative Adversarial Networks for Phase Retrieval

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In this paper, we propose the application of conditional generative adversarial networks to solve various phase retrieval problems. We show that including knowledge of the measurement process at training time leads to an optimization at test time that is more robust to initialization than existing approaches involving generative models. In addition, conditioning the generator network on the measurements enables us to achieve much more detailed results. We empirically demonstrate that these advantages provide meaningful solutions to the Fourier and the compressive phase retrieval problem and that our method outperforms well-established projection-based methods as well as existing methods that are based on neural networks. Like other deep learning methods, our approach is very robust to noise and can therefore be very useful for real-world applications.

Learning Defects in Old Movies from Manually Assisted Restoration

Arthur Renaudeau, Travis Seng, Axel Carlier, Jean-Denis Durou, Fabien Pierre, Francois Lauze, Jean-François Aujol

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Auto-TLDR; U-Net: Detecting Defects in Old Movies by Inpainting Techniques

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We propose to detect defects in old movies, as the first step of a larger framework of old movies restoration by inpainting techniques. The specificity of our work is to learn a film restorer's expertise from a pair of sequences, composed of a movie with defects, and the same movie which was semi-automatically restored with the help of a specialized software. In order to detect those defects with minimal human interaction and further reduce the time spent for a restoration, we feed a U-Net with consecutive defective frames as input to detect the unexpected variations of pixel intensity over space and time. Since the output of the network is a mask of defect location, we first have to create the dataset of mask frames on the basis of restored frames from the software used by the film restorer, instead of classical synthetic ground truth, which is not available. These masks are estimated by computing the absolute difference between restored frames and defectuous frames, combined with thresholding and morphological closing. Our network succeeds in automatically detecting real defects with more precision than the manual selection with an all-encompassing shape, including some the expert restorer could have missed for lack of time.

GraphBGS: Background Subtraction Via Recovery of Graph Signals

Jhony Heriberto Giraldo Zuluaga, Thierry Bouwmans

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Auto-TLDR; Graph BackGround Subtraction using Graph Signals

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Background subtraction is a fundamental pre-processing task in computer vision. This task becomes challenging in real scenarios due to variations in the background for both static and moving camera sequences. Several deep learning methods for background subtraction have been proposed in the literature with competitive performances. However, these models show performance degradation when tested on unseen videos; and they require huge amount of data to avoid overfitting. Recently, graph-based algorithms have been successful approaching unsupervised and semi-supervised learning problems. Furthermore, the theory of graph signal processing and semi-supervised learning have been combined leading to new insights in the field of machine learning. In this paper, concepts of recovery of graph signals are introduced in the problem of background subtraction. We propose a new algorithm called Graph BackGround Subtraction (GraphBGS), which is composed of: instance segmentation, background initialization, graph construction, graph sampling, and a semi-supervised algorithm inspired from the theory of recovery of graph signals. Our algorithm has the advantage of requiring less data than deep learning methods while having competitive results on both: static and moving camera videos. GraphBGS outperforms unsupervised and supervised methods in several challenging conditions on the publicly available Change Detection (CDNet2014), and UCSD background subtraction databases.

A Bayesian Deep CNN Framework for Reconstructing K-T-Undersampled Resting-fMRI

Karan Taneja, Prachi Kulkarni, Shabbir Merchant, Suyash Awate

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Auto-TLDR; K-t undersampled R-fMRI Reconstruction using Deep Convolutional Neural Networks

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Undersampled reconstruction in resting functional magnetic resonance imaging (R-fMRI) holds the potential to enable higher spatial resolution in brain R-fMRI without increasing scan duration. We propose a novel framework to reconstruct k-t undersampled R-fMRI relying on a deep convolutional neural network (CNN) framework that leverages the insight that R-fMRI measurements are in k-space (frequency domain) and explicitly models the Fourier transformation from the frequency domain to the spatial domain. The architecture of our CNN framework comprises a multi-stage scheme that jointly learns two multilayer CNN components for (i)~filling in missing k-space data using acquired data in frequency-temporal neighborhoods and (ii)~image quality enhancement in the spatiotemporal domain. We propose four methods within our framework, including a Bayesian CNN that produces uncertainty maps indicating the per-voxel (and per-timepoint) confidence in the blood oxygenation level dependent (BOLD) time-series reconstruction. Results on brain R-fMRI show that our CNN framework improves over the state of the art, quantitatively and qualitatively, in terms of the connectivity maps for three cerebral functional networks.

Approach for Document Detection by Contours and Contrasts

Daniil Tropin, Sergey Ilyuhin, Dmitry Nikolaev, Vladimir V. Arlazarov

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Auto-TLDR; A countor-based method for arbitrary document detection on a mobile device

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This paper considers the task of arbitrary document detection performed on a mobile device. The classical contour-based approach often mishandles cases with occlusion, complex background, or blur. Region-based approach, which relies on the contrast between object and background, does not have limitations, however its known implementations are highly resource-consuming. We propose a modification of a countor-based method, in which the competing hypotheses of the contour location are ranked according to the contrast between the areas inside and outside the border. In the performed experiments such modification leads to the 40% decrease of alternatives ordering errors and 10% decrease of the overall number of detection errors. We updated state-of-the-art performance on the open MIDV-500 dataset and demonstrated competitive results with the state-of-the-art on the SmartDoc dataset.

FOANet: A Focus of Attention Network with Application to Myocardium Segmentation

Zhou Zhao, Elodie Puybareau, Nicolas Boutry, Thierry Geraud

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Auto-TLDR; FOANet: A Hybrid Loss Function for Myocardium Segmentation of Cardiac Magnetic Resonance Images

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In myocardium segmentation of cardiac magnetic resonance images, ambiguities often appear near the boundaries of the target domains due to tissue similarities. To address this issue, we propose a new architecture, called FOANet, which can be decomposed in three main steps: a localization step, a Gaussian-based contrast enhancement step, and a segmentation step. This architecture is supplied with a hybrid loss function that guides the FOANet to study the transformation relationship between the input image and the corresponding label in a threelevel hierarchy (pixel-, patch- and map-level), which is helpful to improve segmentation and recovery of the boundaries. We demonstrate the efficiency of our approach on two public datasets in terms of regional and boundary segmentations.

Deep Fusion of RGB and NIR Paired Images Using Convolutional Neural Networks

琳 梅, Cheolkon Jung

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Auto-TLDR; Deep Fusion of RGB and NIR paired images in low light condition using convolutional neural networks

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In low light condition, the captured color (RGB) images are highly degraded by noise with severe texture loss. In this paper, we propose deep fusion of RGB and NIR paired images in low light condition using convolutional neural networks (CNNs). The proposed deep fusion network consists of three independent sub-networks: denoising, enhancing, and fusion. We build a denoising sub-network to eliminate noise from noisy RGB images. After denoising, we perform an enhancing sub-network to increase the brightness of low light RGB images. Since NIR image contains fine details, we fuse it with the Y channel of RGB image through a fusion sub-network. Experimental results demonstrate that the proposed method successfully fuses RGB and NIR images, and generates high quality fusion results containing textures and colors.

LFIEM: Lightweight Filter-Based Image Enhancement Model

Oktai Tatanov, Aleksei Samarin

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Auto-TLDR; Image Retouching Using Semi-supervised Learning for Mobile Devices

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Photo retouching features are being integrated into a growing number of mobile applications. Current learning-based approaches enhance images using large convolutional neural network-based models, where the result is received directly from the neural network outputs. This method can lead to artifacts in the resulting images, models that are complicated to interpret, and can be computationally expensive. In this paper, we explore the application of a filter-based approach in order to overcome the problems outlined above. We focus on creating a lightweight solution suitable for use on mobile devices when designing our model. A significant performance increase was achieved through implementing consistency regularization used in semi-supervised learning. The proposed model can be used on mobile devices and achieves competitive results compared to known models.

Deep Realistic Novel View Generation for City-Scale Aerial Images

Koundinya Nouduri, Ke Gao, Joshua Fraser, Shizeng Yao, Hadi Aliakbarpour, Filiz Bunyak, Kannappan Palaniappan

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Auto-TLDR; End-to-End 3D Voxel Renderer for Multi-View Stereo Data Generation and Evaluation

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In this paper we introduce a novel end-to-end frameworkfor generation of large, aerial, city-scale, realistic syntheticimage sequences with associated accurate and precise camerametadata. The two main purposes for this data are (i) to en-able objective, quantitative evaluation of computer vision al-gorithms and methods such as feature detection, description,and matching or full computer vision pipelines such as 3D re-construction; and (ii) to supply large amounts of high qualitytraining data for deep learning guided computer vision meth-ods. The proposed framework consists of three main mod-ules, a 3D voxel renderer for data generation, a deep neu-ral network for artifact removal, and a quantitative evaluationmodule for Multi-View Stereo (MVS) as an example. The3D voxel renderer enables generation of seen or unseen viewsof a scene from arbitary camera poses with accurate camerametadata parameters. The artifact removal module proposes anovel edge-augmented deep learning network with an explicitedgemap processing stream to remove image artifacts whilepreserving and recovering scene structures for more realis-tic results. Our experiments on two urban, city-scale, aerialdatasets for Albuquerque (ABQ), NM and Los Angeles (LA),CA show promising results in terms structural similarity toreal data and accuracy of reconstructed 3D point clouds

Early Wildfire Smoke Detection in Videos

Taanya Gupta, Hengyue Liu, Bir Bhanu

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Auto-TLDR; Semi-supervised Spatio-Temporal Video Object Segmentation for Automatic Detection of Smoke in Videos during Forest Fire

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Recent advances in unmanned aerial vehicles and camera technology have proven useful for the detection of smoke that emerges above the trees during a forest fire. Automatic detection of smoke in videos is of great interest to Fire department. To date, in most parts of the world, the fire is not detected in its early stage and generally it turns catastrophic. This paper introduces a novel technique that integrates spatial and temporal features in a deep learning framework using semi-supervised spatio-temporal video object segmentation and dense optical flow. However, detecting this smoke in the presence of haze and without the labeled data is difficult. Considering the visibility of haze in the sky, a dark channel pre-processing method is used that reduces the amount of haze in video frames and consequently improves the detection results. Online training is performed on a video at the time of testing that reduces the need for ground-truth data. Tests using the publicly available video datasets show that the proposed algorithms outperform previous work and they are robust across different wildfire-threatened locations.

Enhancing Deep Semantic Segmentation of RGB-D Data with Entangled Forests

Matteo Terreran, Elia Bonetto, Stefano Ghidoni

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Auto-TLDR; FuseNet: A Lighter Deep Learning Model for Semantic Segmentation

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Semantic segmentation is a problem which is getting more and more attention in the computer vision community. Nowadays, deep learning methods represent the state of the art to solve this problem, and the trend is to use deeper networks to get higher performance. The drawback with such models is a higher computational cost, which makes it difficult to integrate them on mobile robot platforms. In this work we want to explore how to obtain lighter deep learning models without compromising performance. To do so we will consider the features used in the Entangled Random Forest algorithm and we will study the best strategies to integrate these within FuseNet deep network. Such new features allow us to shrink the network size without loosing performance, obtaining hence a lighter model which achieves state-of-the-art performance on the semantic segmentation task and represents an interesting alternative for mobile robotics applications, where computational power and energy are limited.

A Lumen Segmentation Method in Ureteroscopy Images Based on a Deep Residual U-Net Architecture

Jorge Lazo, Marzullo Aldo, Sara Moccia, Michele Catellani, Benoit Rosa, Elena De Momi, Michel De Mathelin, Francesco Calimeri

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Auto-TLDR; A Deep Neural Network for Ureteroscopy with Residual Units

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Ureteroscopy is becoming the first surgical treatment option for the majority of urinary affections. This procedure is carried out using an endoscope which provides the surgeon with the visual and spatial information necessary to navigate inside the urinary tract. Having in mind the development of surgical assistance systems, that could enhance the performance of surgeon, the task of lumen segmentation is a fundamental part since this is the visual reference which marks the path that the endoscope should follow. This is something that has not been analyzed in ureteroscopy data before. However, this task presents several challenges given the image quality and the conditions itself of ureteroscopy procedures. In this paper, we study the implementation of a Deep Neural Network which exploits the advantage of residual units in an architecture based on U-Net. For the training of these networks, we analyze the use of two different color spaces: gray-scale and RGB data images. We found that training on gray-scale images gives the best results obtaining mean values of Dice Score, Precision, and Recall of 0.73, 0.58, and 0.92 respectively. The results obtained show that the use of residual U-Net could be a suitable model for further development for a computer-aided system for navigation and guidance through the urinary system.

Explorable Tone Mapping Operators

Su Chien-Chuan, Yu-Lun Liu, Hung Jin Lin, Ren Wang, Chia-Ping Chen, Yu-Lin Chang, Soo-Chang Pei

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Auto-TLDR; Learning-based multimodal tone-mapping from HDR images

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Tone-mapping plays an essential role in high dynamic range (HDR) imaging. It aims to preserve visual information of HDR images in a medium with a limited dynamic range. Although many works have been proposed to provide tone-mapped results from HDR images, most of them can only perform tone-mapping in a single pre-designed way. However,the subjectivity of tone-mapping quality varies from person to person, and the preference of tone-mapping style also differs from application to application. In this paper, a learning-based multimodal tone-mapping method is proposed, which not only achieves excellent visual quality but also explores the style diversity. Based on the framework of BicycleGAN [1], the proposed method can provide a variety of expert-level tone-mapped results by manipulating different latent codes. Finally, we show that the proposed method performs favorably against state-of-the-art tone-mapping algorithms both quantitatively and qualitatively.